LOCUS       NM_001024902            2154 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 56 (Lrrc56), mRNA.
ACCESSION   NM_001024902 XM_344977
VERSION     NM_001024902.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2154)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 2154)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC097444.1.
            
            On Jun 17, 2005 this sequence version replaced XM_344977.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC097444.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2154
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..2154
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /note="leucine rich repeat containing 56"
                     /db_xref="GeneID:365389"
                     /db_xref="RGD:1311654"
     exon            1..83
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            84..154
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            155..342
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     CDS             166..1812
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 56"
                     /protein_id="NP_001020073.1"
                     /db_xref="GeneID:365389"
                     /db_xref="RGD:1311654"
                     /translation="MDPAWDGSQGSRPGTASIRVRELSWQGLNNPQPQNKRLGSHGDI
                     YRERRVEEHLSPARLQALAQVDDLQLVRVLEMCVDTRKNSLGNFGMHLPNLIQLKLNH
                     SCLGSLRDLGTSLGQLQVLWLARCGLTDLDGIGSFLALKELYVSYNNISDLSPLCLLE
                     QLEVLDLEGNNVEDLGQMRYLQLCPRLTTLTLEGNLVCLKPDPGPSNKAPQDYNYRAE
                     VKKLIPQLHILDEVPTTCTNLPAPQKLSQDWLMVKEAIKEGNVLDILLPRLECSHGAT
                     IRKFDPTLPVPETQPWALSLLVPEGPLPEGLLSENPAAEDHASNLTHGPGQVLCGNPT
                     KGLRERRNQYQEWAPLEQLPPHRPDLAIRPSTLRPDPAESCDLSMTGLRAWREPGLRP
                     LLQRQLEFQQERLTHVQAQDPQKAPIEQEDQTGPKTSLTPLRLASELSRTSGFHLIPS
                     PPKYPMPPESGISSLGRSADLPFRGRRLRVLGSLGPSLGEGSVLGERLALRALEVSSD
                     PSHRAQGCPDPKPSLGPATCPLGLHCLHHLNPIPPAHPFP"
     exon            343..430
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            431..491
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            492..588
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            589..789
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            790..973
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            974..1135
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            1136..1200
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1337
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            1338..1477
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
     exon            1478..2129
                     /gene="Lrrc56"
                     /gene_synonym="RGD1311654"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccctcactt gagagagcga ccgccgcggt ggaggggccc agggctgcgc cccaagtctt
       61 gggcacccta gcccacccct caggtgttac atgtagacac atgtggcccc cttgcccgga
      121 tgtttgacct acagcaggag ccagctacct tcaggttgga cgtggatgga cccagcctgg
      181 gatggatccc aggggtctcg accaggcaca gctagtatcc gggtacggga gctgagctgg
      241 cagggcctaa acaaccccca accacaaaac aagagactgg gcagccatgg ggatatctac
      301 agggagcggc gggtggagga gcatctatcc cctgcacgac tgcaggccct ggcccaggta
      361 gatgacctcc aactggtgag ggtcctggag atgtgtgtgg acacccgtaa gaacagcctg
      421 gggaacttcg gaatgcacct tcctaacctg atccaactga agctgaacca cagctgcctg
      481 ggctccctca gagacctggg cacttctctg ggccaactgc aggtgctgtg gctggctcgc
      541 tgtggcctga ctgacttgga tggcattggc tccttcttgg cactgaagga actttatgtc
      601 tcctacaaca acatctcgga cctgagccca ctgtgtctgc tggagcagct ggaggtgctg
      661 gaccttgagg gcaacaatgt ggaggacctg gggcagatgc ggtacctaca gctgtgccca
      721 cgcttgacca cgcttacatt ggaggggaat ctagtgtgcc tgaagccaga ccctggccct
      781 tctaacaagg cacctcagga ctacaactac agagcagagg taaagaagct catcccccag
      841 ctccatatcc tagatgaggt acccaccaca tgcaccaact tgcctgctcc ccagaagctg
      901 agccaggact ggctgatggt gaaggaggcc atcaaggaag gcaacgtgct tgacattctc
      961 ctgcctcggc tggagtgttc ccatggagcc accattcgga aatttgaccc aaccttgcct
     1021 gtgcctgaga cccagccatg ggccttgtcc ctgctggtcc ctgagggccc cttgcctgaa
     1081 ggtctgcttt ctgagaaccc agccgcagaa gaccatgcca gcaacctcac ccatggtcct
     1141 ggtcaagttc tctgtgggaa ccccaccaaa ggcctacggg aacgtagaaa ccagtaccag
     1201 gaatgggcac ccctggaaca gctgccccca cataggccag atctggccat cagaccctcc
     1261 accctaaggc ctgaccctgc agaaagctgt gacctgtcaa tgactgggct tcgggcctgg
     1321 agggaacctg gcctgcgtcc tcttctccaa agacagctgg agttccaaca ggaaagactt
     1381 actcatgtcc aggcccagga cccacagaag gctcctatag aacaggaaga ccagactgga
     1441 cccaagactt ccctaacccc gctacgcctg gcctcagaac tttccaggac atcaggcttt
     1501 cacttgatcc cttctccccc aaagtaccca atgccacctg agtcaggcat cagttccttg
     1561 gggagatctg cagacctacc cttcagagga cgtaggctga gagtcctggg cagcttgggg
     1621 cctagcctgg gtgaggggtc tgtcctgggt gagaggttgg ccttgagagc cctggaggtg
     1681 tcctcagacc ccagccatcg agcccaggga tgtccagatc ccaagccatc actaggcccg
     1741 gcaacttgtc ctctagggct ccactgcctc catcacctga accctatccc tccagcccat
     1801 cctttccctt agcgtagccc tcccttgctg acatctcttg gcctaggtgg ggccaaaatg
     1861 aagtgggtga acttggggct ggacttttta gaggtcccag gactctgggt catctatatg
     1921 gcccaaattc tgagcctgct aatcctaggg ttcaaaatgg cacaaccatc ctgggaaggt
     1981 ttgcaggttc ccttatgtgg ggcagttcct ttctcttggg acaccatata acctttgtaa
     2041 aagccaagcg aaacattttc aactctcagg tatgcagaaa tgtgctttac tttataagca
     2101 atggttggtt caataaatta tgaagctgga aaaaaaaaaa aaaaaaaaaa aaaa
//
