LOCUS       NM_001395014            5890 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 55 (Lrrc55), mRNA.
ACCESSION   NM_001395014 XM_006234472
VERSION     NM_001395014.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5890)
  AUTHORS   Yan,J. and Aldrich,R.W.
  TITLE     BK potassium channel modulation by leucine-rich repeat-containing
            proteins
  JOURNAL   Proc Natl Acad Sci U S A 109 (20), 7917-7922 (2012)
   PUBMED   22547800
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On May 26, 2021 this sequence version replaced XM_006234472.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.734668.1,
                                           SRR26360194.2524436.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840110, SAMN12840131
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-323               JAXUCZ010000003.1  90686970-90687292   c
            324-1841            JAXUCZ010000003.1  90684535-90686052   c
            1842-5890           JAXUCZ010000003.1  90676549-90680597   c
FEATURES             Location/Qualifiers
     source          1..5890
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q24"
     gene            1..5890
                     /gene="Lrrc55"
                     /note="leucine rich repeat containing 55"
                     /db_xref="GeneID:311171"
                     /db_xref="RGD:1561726"
     exon            1..323
                     /gene="Lrrc55"
                     /inference="alignment:Splign:2.1.0"
     exon            324..1841
                     /gene="Lrrc55"
                     /inference="alignment:Splign:2.1.0"
     CDS             1142..2077
                     /gene="Lrrc55"
                     /note="leucine-rich repeat-containing protein 55; BK
                     channel auxilliary gamma subunit LRRC55; BK channel
                     auxiliary gamma subunit LRRC55"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 55
                     precursor"
                     /protein_id="NP_001381943.1"
                     /db_xref="GeneID:311171"
                     /db_xref="RGD:1561726"
                     /translation="MGSLQYCCCQLPKMGDTWAQLPWPGPPHSALLLVFFLLAAGVMH
                     SDAGASCPVLCTCRNQVVDCSNQRLFSVPPDLPMDTRNLSLAHNRIAAVPPGYLTCYM
                     ELRVLDLRNNSLMELPPGLFLHAKRLAHLDLSYNNLSHVPADMFREAHGLVHIDLSHN
                     PWLRRVHPQAFQGLVHLRDLDLSYGGLAFLSLEALEGLPGLVTLQIGGNPWVCGCTME
                     PLLKWLRNRIQRCTADSQLAECRGPPEVEGAPLFSLTEESFKACHLTLTLDDYLFIAF
                     VGFVVSIASVATNFLLGITANCCHRWSKANEEEEI"
     exon            1842..5890
                     /gene="Lrrc55"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggctctggcg gaagccacac accaaggcag cctcggcacc cgctgagttt cccaagaggc
       61 attcagattc tgtgaacttt ctaagcatcc tctctcaaat ttcctttcag cgtaaaagaa
      121 ggggcacagg gaccacagga caggaaaacg cagaagatgc tggcctggga tccaggagac
      181 atggaagagg agagtcgggg gaggggaaga gccggatagg caatctgttc gggagctagc
      241 aagcaaagga gcgggggatt ccaggatgag ggaggcagag cctttcgtct gcggcagatt
      301 gatgtctgtg tccttggaac agaagtgact tctgcctctg cctgctgagt gtacagctga
      361 gcatggtgac agctgaagac atagataatg cttttctaaa tgacccctac cagtgcctcc
      421 agattcatgg cgttttccag attcagtggt ccagacagta ggtgtcactt ggtactcacc
      481 cctccctggg aagcaacgaa cattccgtga gattccagag accactgaga ctgaacagtc
      541 ggactttcaa gaaacccatg gaacatactt ctcccccatc ctaaatctct ggccccaggt
      601 cttttgtgaa ctcatgccca ctgggccacc aggagaaatg gcctctggga actttctgaa
      661 gatcaaggtg ccgttctgac ttcctaatca gtcccagacc gaggacaggg cttaagtttt
      721 cttagaagaa gtgccaggac ctttaaaggg cacctttcat ctccctcaca tcctcccctg
      781 ccccaccagt cagacacaac ataagaggaa gcatccagcg ggcatgggtg acaggagcac
      841 aaaagatctg cagggaccct tccaggacct gctgacagct tctccagccc catccttgct
      901 cccctcattc cttaagcttt gatcgtcctt tcagacctgg ggtacgtcaa ctgggtcctt
      961 gctcctcagg ctctacaaag ggacatccta tggatcttag gaagtccttg ggtgtttaga
     1021 ggctcccagg gaagtgttga gccatgatag cactctctca gaagccccac cttccagact
     1081 caggcctcta atgtagcagc atccctgtaa cttgacggtt ggacctaggg acaccactct
     1141 catgggctcc ctacagtact gctgctgcca gctgccaaag atgggtgaca cctgggccca
     1201 gcttccctgg cctgggccgc cccactcggc cttgttgctg gtcttcttcc tcttggcagc
     1261 tggggtgatg cactctgatg cgggtgccag ttgtccagtc ctttgtacat gtcgtaacca
     1321 agtagtggac tgcagcaacc agcggctgtt ctctgtaccc ccggacctgc caatggacac
     1381 ccgaaacctc agcctagccc acaatcgcat tgcagccgtg cctccaggct atctcacatg
     1441 ctacatggaa ctccgcgtgc tggatttgcg aaacaactcc ttgatggaac tgccccctgg
     1501 cctctttctc cacgccaagc gcttagcaca tctggatctg agctataaca acctcagcca
     1561 cgtgccagct gacatgttcc gggaggctca tggcctggta cacatcgacc tgagccacaa
     1621 cccctggctg cggagggtgc acccccaggc cttccagggc cttgtgcatc tcagagacct
     1681 ggatctcagc tatggtggcc tggctttttt gagccttgaa gcccttgagg gtctcccggg
     1741 gctggtgacc ctacagatcg gaggtaaccc atgggtatgc ggctgcacca tggagccctt
     1801 gctaaagtgg ttgcggaatc ggatacagcg ctgtacagcg gattctcagc tggctgagtg
     1861 tcgggggccc cctgaagttg agggtgcccc cctcttttca ctcactgaag agagcttcaa
     1921 ggcctgccac ctgactctga ccctggatga ttacctcttc atcgcatttg tgggctttgt
     1981 ggtctccatc gcttctgtag ccaccaactt cctcctgggc atcacggcca actgctgtca
     2041 ccgttggagc aaggccaatg aagaagaaga gatttgacac aggtgcctct catccctcca
     2101 tgctgctgcc actgctgctg accactgaac accttgtatc gcggtgccct gaccacctcc
     2161 atcatagctc aaacaaggtc ggaaagctga ctttgtgtga gcacctatcc actttggtcc
     2221 aggcactgtg ctagcaactg ggaatggaag acaaattcag tctggtccct gcccttgagg
     2281 tacttacttc taataaagga aagcaattcc aaaacaccat tttatgacaa aatgtcagtg
     2341 ctctgagcac acagagtgag ggaagccaag cggaaggccc atcatctgtg cctcacaaag
     2401 tccaagaaga attacaggaa ttatctgcta agtagatagg gaagggtaga catagcaaat
     2461 gataggacat agtgtacagg ttgtgttgag agcagcaaac tattctagtg gcctaagtgc
     2521 acataggagg tatgtgcgaa agccaagctt tccctctgac acccaatttc tcagttctca
     2581 ctgctgcttg ccactgccct ccaggagtga gatagcctcc atgccagctc cttgacttct
     2641 cccattagca gctttggggt gaaatgacct cccagtgact tccctatact gcccccaatt
     2701 gcagtctaat tgtgaggtaa tcaccctcag cacccttctt cctatccctg tctctgcttc
     2761 tgacccaagc cttgtcttca aagaaaaggc aggaagcctc gcaatgaggc agcaaaagtc
     2821 ttggcaccct gggaccccaa tttatgtgac tgttctttcc atggtgctca caccaaagga
     2881 actcaccagg aaagtgcact gtagggtgca gatcctagca tgacagtacc ccaggcagga
     2941 ggacaaagcc accacattca cacgcacaga atggtatgtc ttctctcctt agtaactcgc
     3001 tcatttgagc ataaagaaag aatagctatt aattgctgac tcttactagc atcaggcagt
     3061 attataagct ccctccttaa cagtgtcctt tcacacatac aacagccctt tcagggggat
     3121 ttatcgttcc catttggcag atgaggtcat caggctcaga aaagataagc tagcttgctg
     3181 tgtcatgatc aaaataaaat gagcattctt catcacaatt ctttctaaag ctatataagt
     3241 tcaagttcag gccatgctaa tggagttgct gataaggacc aggcactcct ctgggcatgg
     3301 ttctattttc tgactcatct cttgccattc tccctgtcaa gtgtgtgcag tgtttgtcat
     3361 tcccactttc cagttgaatt cattgcagag agctgggatg tttacccaaa ttatctgtat
     3421 aaacaaagaa tatgacaggt gactccactg aggaaatctg tatctagtcc gtcagaaact
     3481 aagaactctg ggaaacacga tagtcaccgt ctttgtcatc atcttcatct ccctcatcca
     3541 tgtcacctgc ttcatcatga tcttccctgt ctccttgagc actgaaatgt ctaggatact
     3601 tcttttgtat tcctctcctg gatagaatac acatcaaaat gctgttttac aagtgggaaa
     3661 gtagaagcta aaggttgggt atgccttcag cctaaggctg gactcaattc tgtcacggtt
     3721 ctctttccag tgcttcctcg ggcacctcct ggaagcctgc ttagcaggac tctagaattc
     3781 agactcgtta taacaataat aatcaaaaaa acaataaaag gccataaagc ccagctgtgc
     3841 cctgactgtg ctcccagtgg ggcaactcca gcctctaaaa cagaggcacc acaagtgaca
     3901 tctaaacaga agatgcctcc ttaacagtgt atgagcacat cattagaact ggtggacata
     3961 atgactgtct ttttttttaa atcagatctt tgaaaaacag gagatgtacc tcctaccgcg
     4021 ttatgttgaa agagaaactg aagaatctaa gaaagtgata ggtgagaacc cctgtacagg
     4081 cgatggggag acccatctgg gtaggcccag tcctgttagc aaggctggtt tggatacaaa
     4141 aatgaaaaca agagctttcc atcttggctc caaccctagc aagtatccat catccacttg
     4201 gccacccagc tgtcctagaa tgcatggaga aggagaacat ttcatattcc aactcatctg
     4261 cattgatcta atcaaccaaa agagaccctg gaagatttac ccctcattct tgcttttaat
     4321 gcctaggcca gagctctgtt cctatgaaat acgatataga actatgccct gctctccctg
     4381 accactcaac tgtggccaac aatggtagac tccagctatt ctccacaagc taagcttatt
     4441 gcctaaagtg ttttggaaag gaactcttag aaatagtatt tctgataaaa atcacttatc
     4501 tttccataga agaacaccat gctcacttat agtaatctcc tggacagtac tgtttactga
     4561 attatagtta ccatatttta agatatacta ctctgtttta catagaatta gaaccagaca
     4621 agacaccaaa tgcctcttga gatcaaatgt tctttggagc ggcacaattt gatctccatt
     4681 aatggcaaag acttctaagc aagatatatc aagacaatgt ttctccattt tctaagaggt
     4741 ccccagttaa ctaaggcaca agaagaggga catttagcct ccacactaac gtgaaattct
     4801 aataccacca ccagccggtt caggctgtca gaactaaatg tctagagata gtctaataag
     4861 ccttgtggaa attgtttaca tatcctggtg atggcaaacc cattatgatg ttcccatgaa
     4921 gttttgttca attttcccac actggctaat gtgggattgt ttgtgtgtcc atatgtgtat
     4981 ctatggttca tttatgttgg ttatctgctg acttggagaa tattccttta gaacttgggt
     5041 tcaaatctct gacacagtcc actcggctat caagttgata tacaaatatg catcctaccc
     5101 atttgtctag ctgctcagga aatatgaaaa aagccaatgc tataatggaa acactctaat
     5161 gaaaacctgg ctcctcccta cttccctctg tcttcctcta tcccctagac acttgtaccc
     5221 ctcaaagagg ttttctttat gctgtgtctg aagctatcat gtcataacta accaacaaga
     5281 ttatggtggt caagggctag ccaataaaat tcttctttag aaaagatccc acatctgcac
     5341 cacactattc tggaacattc ccctctggtt atccttaaga taccacatcc tttcccattt
     5401 tctccaggat tcccacagaa acttgaaaaa agaggttgcc caaacatact atggagtttc
     5461 atggtctcag ttaagggctt gatgtaatgt atttggagag attgggacat gtatttcatt
     5521 ccaacctttg aaaaggccaa cagctccatt ttctccttac acatatttgt tgccattctt
     5581 tccattgcag aagagcacaa aatgatatct ttgttcattc ctcaaatcta gggaaccttg
     5641 tcttgtatgg tccagaagga ggcaaacgga agtaaaagag gcaggaccca agggcctttt
     5701 gtaagtcaca gcactggtcg ggagatgggt ccatagacct ctctgttttc ctaagccctg
     5761 atgtctggtg gtgggagggc tagggaggag tcgatgccaa tctttgtatg gaaattattt
     5821 tataaccatg cacttttgta actgtgaaga atttttcata aatgcacatt aataataaaa
     5881 agtgtagttt
//
