LOCUS       XM_039103893            7060 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine rich repeat containing 53
            (Lrrc53), mRNA.
ACCESSION   XM_039103893
VERSION     XM_039103893.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103893.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-110               JACYVU010000079.1  30880975-30881084
            111-224             JACYVU010000079.1  30891929-30892042
            225-544             JACYVU010000079.1  30894223-30894542
            545-1037            JACYVU010000079.1  30894544-30895036
            1038-1550           JACYVU010000079.1  30897779-30898291
            1551-7060           JACYVU010000079.1  30901058-30906567
FEATURES             Location/Qualifiers
     source          1..7060
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7060
                     /gene="Lrrc53"
                     /note="leucine rich repeat containing 53; The sequence of
                     the model RefSeq transcript was modified relative to its
                     source genomic sequence to represent the inferred CDS:
                     deleted 1 base in 1 codon; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins, and 99% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:102555624"
                     /db_xref="RGD:7683241"
     CDS             137..3055
                     /gene="Lrrc53"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: deleted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: leucine-rich
                     repeat-containing protein 53"
                     /protein_id="XP_038959821.1"
                     /db_xref="GeneID:102555624"
                     /db_xref="RGD:7683241"
                     /translation="MLYVTVACPASCVACTQDVTLCHQLNHIVAAPETTKVLILTDGD
                     LSSVERTNLTLQVNLALLSLSRNAIYRIQVGSLHGLTKLRTSSLGHNHIPSSSLSDHT
                     FSKQRSLQVLVLNHNSLRSLRAAWFRNKALSRLLLGGNRITNLTRSSFKGANLHRLRH
                     LDLSNDFISFIEKDAFQPLPQLQEVDLSRNMLAHTPDAFTPLKQLSPLSLEGNHWSCT
                     CDLYQLARFLRKFVKSPARTLRNTKDPNCEVFPAAVATAKSMLRLSETNCDSKGHNVT
                     LALKDRRPLLPGQDVALITVLGFAGAIGLTCAGLVIFNWKLQQGRANERTSKNLSCRT
                     LNESPCAHEARNGRAVGYCNCHLTRENETQVMSDVGSRKEAPLRQENSHQARLAPKST
                     AVDVSFRKLKGRDHEAHSACSCLADELRAGCLGPPGNKKALYDADLATRCCPKTAEKP
                     SNQKRGEIRSQILPQHGTKTIDVSSDTFRSRYATSSSALARESVGKHLMNESWQPPID
                     KGDNAVEPSVRRLFSTSSFPRRQEPGERAVGRMAHRHRVGYDHHQDSLKWSKPTDSYP
                     NASFTCKYVSWDAFQDFTREKKPNRRQHTESEKQQIQINRAIEKFLRSQEVKDKSRLS
                     AKIKKAYSTKRVKFQDPDLVRAKGLVVSAETPVSGRQRDSESQLPTSLHLKNCASLEE
                     VKEARENLPERQTLKKKRPKPSHLREKAKGQNLRMKVGLHPFGKTRVHPEESTPEPTK
                     RRKRTRLPPQGPAGTSGRKFKTEPLSFVSSQPPERSSHTKLTCSKVPLERSLDQTPNQ
                     ETNDTFRADSFSVDNRGSEQGSCQPVGCAPNGSLLMAPQPSVRVAECLHSPPLLSPDQ
                     MENVTGLQGEVLGPSPACLGNGENSVLLSKHPRGVIDHVVTVSTQDTDQDELKINELN
                     QFTLSLGDQVIGTFSNDHSLDENQALQQEEQKPSHGQLGSEEKPLMNTVRASCGRVEG
                     "
ORIGIN      
        1 cgtggctccg gccaggccct ccccggctca gcaggcaatc ggaagaagag gaaggcgaca
       61 gagagccact gctgttactt gatgctggag acatgagctg catggggaag gtggatggtt
      121 ctcacccctt gccttcatgc tgtacgtgac ggtagcctgc cctgcgtcct gtgtggcatg
      181 cacccaagat gtgaccctgt gtcaccagct aaaccacatt gtagcagctc ctgagaccac
      241 aaaggttcta atccttacag acggagacct ctcttcagta gagcgtacca acctgactct
      301 ccaggttaac ctggccctgc tctctctgag ccgaaatgct atctatagaa ttcaggtagg
      361 ctccctgcat ggcctcacca agcttcggac ctcgtctctg ggacacaacc acatccccag
      421 ttcttctctg tcggaccaca ccttcagcaa gcagcgaagc ctgcaggtcc tggttctgaa
      481 ccataattcc ttgcgcagcc tgagagcagc ctggttccgg aacaaggccc tcagccgact
      541 cttgttgggt ggaaatcgga tcaccaacct cacacggagt tcttttaaag gtgcgaacct
      601 ccacagactc aggcatctgg acttatctaa cgatttcatt tccttcattg agaaagatgc
      661 cttccagccc ctgccccagc tgcaggaagt ggatctttct agaaacatgc tggctcacac
      721 gccggacgcc tttaccccgc tgaagcagct gagccccctg agcttggagg gaaaccactg
      781 gagttgcacc tgtgacctct accagctagc ccgtttttta agaaaatttg tgaagtcacc
      841 ggctcgcacg cttcgtaata ccaaggaccc aaactgcgag gtgttcccag cagctgtggc
      901 cactgcaaag agcatgctga ggctgtctga gaccaactgt gactccaagg gtcataacgt
      961 cactctggct ctaaaggaca ggcgtcccct cctcccagga caggatgtgg ctctcatcac
     1021 tgtgcttggc tttgcaggag ccattggcct tacatgtgca gggttagtca tatttaactg
     1081 gaaactccaa caaggccgag caaatgaacg cacatccaaa aacctttctt gcagaaccct
     1141 caatgaatcc ccgtgtgctc atgaagcaag aaatggccgt gccgtggggt actgtaactg
     1201 ccacttaact cgagaaaatg agacacaggt catgtccgat gtgggctcca gaaaggaagc
     1261 accacttaga caggaaaaca gccaccaagc gaggctggcc cccaagtcca cagccgtgga
     1321 tgtatcattc agaaagctga aagggagaga ccatgaggca cacagtgctt gctcttgcct
     1381 ggctgatgaa ctacgggcag gatgcttggg gcctcctggg aacaagaaag ctctttatga
     1441 tgcagactta gcgacaagat gttgtccaaa gacagctgaa aagccaagca accagaaacg
     1501 tggagaaatc cgctctcaaa tcctgccaca gcatggaaca aaaacaatag atgtgagcag
     1561 tgacacattc agaagcagat atgcgacatc ctcctcagcc ttggcaagag agagtgttgg
     1621 gaagcattta atgaatgaat catggcagcc tccaatagac aaaggagaca atgctgtaga
     1681 gccatctgta cggagactgt tctccaccag ctcattcccc aggcgacagg agccagggga
     1741 acgtgctgta ggcagaatgg cccacagaca cagagtggga tatgaccatc accaggactc
     1801 tttaaagtgg agcaagccca cggattctta tcccaatgct tccttcacct gcaaatatgt
     1861 gtcttgggat gcatttcaag attttacgag ggagaagaag ccaaatcgaa gacagcacac
     1921 agaatctgag aagcagcaaa ttcaaattaa cagagcaata gaaaaattcc tcaggagtca
     1981 ggaggtcaaa gacaaatcaa ggttgtcagc aaaaatcaag aaggcatatt ctacgaagag
     2041 ggttaaattc caggaccctg atttagtcag ggcaaaaggg ctggtggtgt cagcagaaac
     2101 accagtctct gggagacagc gagatagtga aagccaactc ccgacttcct tgcatctcaa
     2161 aaactgtgcc agcctggagg aggtcaagga agcaagagaa aaccttccag agcgacagac
     2221 tctgaaaaag aagagaccca agccctccca tctgagggag aaggcaaagg ggcagaattt
     2281 aaggatgaag gtaggtctgc acccctttgg gaaaactagg gtccacccag aggaatctac
     2341 accagaaccc accaagagac gtaaacgaac aaggttacct ccccagggac cagccggaac
     2401 ttccgggaga aagttcaaaa cagaacctct atcttttgtc agttctcagc cgccagagag
     2461 gagcagccat actaagctca cttgttcaaa ggtgccactg gaacgctcct tagatcagac
     2521 tcctaatcag gaaacaaacg acaccttcag agctgacagc ttttctgtag acaatcgggg
     2581 ttctgagcag ggcagctgcc aaccagtggg ctgcgctccc aatggaagcc tattaatggc
     2641 gcctcagccc tcagtcaggg ttgctgagtg cctgcattca cctcctcttc tttcacccga
     2701 tcaaatggaa aatgtgactg gtctacaagg ggaagttctt ggcccttccc cagcctgttt
     2761 ggggaatgga gagaatagtg ttttactgtc taaacacccc aggggagtta ttgaccatgt
     2821 agtaacggtg tccactcaag acacggacca ggacgaatta aagatcaatg agttaaacca
     2881 gtttactttg tccctcggcg accaggtgat tggcactttc agcaatgatc acagtttgga
     2941 tgagaatcaa gctttacaac aggaggagca aaaaccaagc cacggacagc ttggaagtga
     3001 ggaaaagcca ttaatgaaca cagtcagagc atcctgtgga agagtggaag gctgaattat
     3061 ggatgggaaa ggggctggca taggaaacaa gatggctctc agagaggatc gtgtgtcctc
     3121 tcccactgcc gggatgcaac cccacaacag cctgccattc atggaacagc actgtcttcc
     3181 acactagcca aactgcagca ggaggggaca gacaccaaca ctgcatcacg ggggtaaagg
     3241 tggagaacca ccagggacat gggcaggggt gggaacacag aagcaagcac tcctggagag
     3301 ggatgcaaat tctagtgcag caagttagac aacacaaatg ggccacgcag aagaaaggca
     3361 gcagatactg ggaagttcag ggaaagagaa acttgtactg tgctttccaa gctctgacaa
     3421 ggatacagtt tccattgaag aggtgagtaa agtcgaaact ggcatgctat agagtgaggt
     3481 agatccttga actcacaacc atgggcctca ctgcagatgc cttggagata accaaccaga
     3541 gagagaggtg acagggaaca tagggaggct gctgggtcag ggggtgacac caggagctcc
     3601 ttgcctctca caggagttaa atgctattca ttctcagata gaaaacggcg tgcctctaat
     3661 tctgaacaga gaaaatggag ctgaaaaccc tgctaaaaaa catcattaga cacatcgctt
     3721 actggggact cttacccacc acttttggaa gtagagtcag aaacaccaag ccgcatacca
     3781 tttatttcct gcttaggctg tcttcttgga ggatcaaaaa catccctagc ctctgtggac
     3841 accaaacgta ctgttcaggg tgtagtttct cagtaattct tcatccccag tgaaatatag
     3901 gtttgtagtc agctatagca cagaaatcga agatggagcc tgaagtatat tccctatagt
     3961 tgagagaatc ggttccttca aggaacggga tgatgggaac ttttgcctag tcctggaaaa
     4021 tcaaacaaag acttaaaaaa aaagactctc aaatgaaggg aaggttcgac gagaagagaa
     4081 cgttttgcat gtgacgttta ttttatggaa attgttatgc atgtctcaat tagtgctatt
     4141 acaaccttgc tttctgcact gatgagcaca gattcatgtg cgcctgatct gttttcttaa
     4201 ttatggtgta atgaaaattc agccgtgttt gttaattgta ctgcatagag gtaaatttta
     4261 cccgtttgta atcgctttgt cgataatttt cttagatctt aagtaggagt cttaagaaac
     4321 ctactatttc tctaagggga aataattgag gatttccagg ctgactgtag aatttgaaaa
     4381 accctttaag tccagaagag ggcaagctca gcttccttcc tttcagaagg gcaaacaggt
     4441 ttcagaagca acactgtggc tggagaacaa aaggaatttt aatgagcttt attgccggtt
     4501 gttattaata taagtctttg aaaaccaaat aaccattatc gccagtcttc ggaggtttga
     4561 tctctccggt caagcttgtc actgctgttt gctgagcacc cctccttgca cggaagaacc
     4621 aaatgtgctc ataaacactg gatttagctg cagtggagaa taacccttgt tcacggaaag
     4681 tcacatttac ctgaaaacta caggtccact caggcaatct attactgata ccaagtaagg
     4741 tgtttagcct gtgtattcag agcaggatac cagagttcac attgtgtagt ggggggtagg
     4801 caggagacta aacagaaaca agtgttctct gccccatctt tgtatctgcc ctggcctctc
     4861 tgtcctttta ggtgcatttg atatttatta atattaaatg agctttaagg ggttgctcgg
     4921 acactgcaaa cactgctcgg cgcccactgc gcttcgcttc tgtttcctgt gtggatctga
     4981 cagcaagcaa tggaacagtc tcattctgag agcccttcac cccctttctc tgtcttgctt
     5041 ggagtcagac atctctggct cagttcttgc cctacctgtt ctcgcgtagc ctctctgcct
     5101 gggcttcact cccataccac atgctggggt ctccctcctc tcctgatacc acttcactgt
     5161 gggaaacacc ttggaggtga gaggtacacc tatctgctgt cctgtatggt gagtctcctt
     5221 tgttctgact gacagcactc ttggagaggg ggatggggcc atggctttgt ctctgtgtct
     5281 aacttgcatt ttttcctaac gtctcaaaag ttctatcgtc tctgaaatga aggctcctca
     5341 gccttgttct ctctccttgc cgctgccacc caccagtatt aacatcggta ggggtgaagc
     5401 cttctcttcc tcactggctg cttctcagaa ggcagcagaa gtggcccctt gcacactgtc
     5461 acctctttct taggctgctt cctttgcaat agatcgtagg tttccgttag cctccgaatc
     5521 cccatggcaa ccgcacaagt acttgttata atcaactgga tcacagtgcc agcagcccct
     5581 gggggctgtt ctgacctcag aacctgtgct tcagtttcca tgcttcagat ctgtctctgc
     5641 tgggcacgcg ccgctagggt gcttgtggaa ggcacagttt caggctgcgt cgcaggaatg
     5701 ctcattctga gcaatctctc ctttcacaca gacgtgaggc tgctcaacag ccaaagataa
     5761 cccagaggtt tcttcatgga cagagttgca tgcgaccgtt tcagtaaaag atgagaaacc
     5821 cttcgtacct agaaaatatg tctaaaatat tattcattgt ataatttttc actgcttcag
     5881 tggtaaggtt taaacgatgt acaatttctt gtctaagctc atattgcagc tgccagggct
     5941 gacattgctt acctaagtca gcctggctta catggcaaat tccaggccag ccatgattac
     6001 acagaccctg gtttttttgt tttgttttta aaaaaaacaa gacaacaaaa cacacttcct
     6061 tatggttctt ctgttactgt ctggacctgc ctttagtcag tgtcacttaa gccagtactg
     6121 cagactttgg gatattgggg gcttggattg tgtcaggaat tttgagaggt agtctcggtt
     6181 gactaggagg gagtttcaga agggcgaggg ggagtagaaa ggatgtcgat acagtactca
     6241 tgtctgagat tctcaaaaaa ttgaatgagg aaatgaagta gtgggaggaa taacacggca
     6301 ttattcattt acatctgtag atcattttat caaattcttt ttggtctaga ggtttaactg
     6361 tcactgactt cagggctgcc aaaaccagca aacccttcat ctctttgctc accataaaca
     6421 tacatttttt ttcagcgtac acaaattcct tctctcacca gatccttatt cagtgaatgc
     6481 cggtatttgg attttgatat tagcccaagt gttatttccg ggacaacttc aaggactcac
     6541 actctgtcct cagctttctg gttggtttcc tttacatttt tcatggagtc ttcctaaatc
     6601 atggctcata gttctaaatt tattaatgct tgtttattta atcactacat aatggataaa
     6661 gccctcagat tcatggacaa catggcagga ttgagcagta gactcaataa actaattgtt
     6721 gaactctgaa aataatcaga gtgttggtct cttgttgcca tcaccttacc acccaccctg
     6781 ctgatctgat aaggaccttt gagggcattg taaagacaag agaaagagca gaacatcatc
     6841 agatgcaggg tcaaggctga gtgaatgctc aatgttacca gatgcttggc agctccacgg
     6901 tttaatgaca acttgtctcc atctttctgc ctgaaactaa agccagcctg tgtgctgtgc
     6961 tgataaaatt cactccttag taatacaaca tttccattaa aacaatcccc cctgtatatc
     7021 aacatacaca cacacacaca cacacacaca cacacacaca
//
