LOCUS       NM_001106284             915 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 51 (Lrrc51), mRNA.
ACCESSION   NM_001106284 XM_001068008 XM_215012
VERSION     NM_001106284.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Ahmed,Z.M., Masmoudi,S., Kalay,E., Belyantseva,I.A., Mosrati,M.A.,
            Collin,R.W., Riazuddin,S., Hmani-Aifa,M., Venselaar,H., Kawar,M.N.,
            Tlili,A., van der Zwaag,B., Khan,S.Y., Ayadi,L., Riazuddin,S.A.,
            Morell,R.J., Griffith,A.J., Charfedine,I., Caylan,R., Oostrik,J.,
            Karaguzel,A., Ghorbel,A., Riazuddin,S., Friedman,T.B., Ayadi,H. and
            Kremer,H.
  TITLE     Mutations of LRTOMT, a fusion gene with alternative reading frames,
            cause nonsyndromic deafness in humans
  JOURNAL   Nat Genet 40 (11), 1335-1340 (2008)
   PUBMED   18953341
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473956.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_215012.1, XM_001068008.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: DV724536.1, SRR8487226.62092.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q32"
     gene            1..915
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /note="leucine rich repeat containing 51"
                     /db_xref="GeneID:293156"
                     /db_xref="RGD:1565856"
     exon            1..133
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /inference="alignment:Splign:2.1.0"
     exon            134..196
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /inference="alignment:Splign:2.1.0"
     exon            197..334
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /inference="alignment:Splign:2.1.0"
     CDS             253..831
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /note="protein LRTOMT1"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 51"
                     /protein_id="NP_001099754.1"
                     /db_xref="GeneID:293156"
                     /db_xref="RGD:1565856"
                     /translation="MSKRDYMNTSVQEPPLDYSFKSVQMIQDLISEEPRTGLRPVKYS
                     KSGKSLTQSLWLNNNVLNDLKDFNQVVSQLLQHPENLAWIDLSFNDLTTIDPVLTTFF
                     NLSVLYLHGNSIHRLGEVNKLAVLPRLRSLTLHGNPIEEEKGYRQYVLCNLPRITTFD
                     FSGVTKADRSTAEVWKRMNIKPKKVRIKQDVL"
     exon            335..540
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /inference="alignment:Splign:2.1.0"
     exon            541..689
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /inference="alignment:Splign:2.1.0"
     exon            690..915
                     /gene="Lrrc51"
                     /gene_synonym="RGD1565856"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccctgatgaa ctacaagttc cggactgcac tacgagcacg ttcaactgag ccgtctaggg
       61 cgtggtgact aaggtagttg ctatggggtt atgctgagta acttttcagg tagtgagacg
      121 ctgaagcctg aggggaacaa tccctgaacc caaaggaacg aatcccttat gatggcgttt
      181 caggtatcag tgacaggctg aacccagact cccagggccc atacttccac ctgatgaatg
      241 atggcctgaa ctatgagcaa acgggactat atgaacactt cggtgcagga gcctcctctt
      301 gactactcct tcaagagcgt ccaaatgatt caagatctga taagcgagga gccaaggaca
      361 ggtctacgac cagtgaagta ttcaaagtca ggaaagtcac tgacccagtc cctgtggctc
      421 aacaacaatg tcctcaatga cctgaaagac ttcaaccagg tggtttcaca gcttctacag
      481 cacccagaga atctggcctg gattgacctc tccttcaatg acctgactac cattgaccct
      541 gttctaacaa cattcttcaa cctaagtgtc ctctaccttc atggcaacag catccatcgc
      601 ctaggggagg tgaataagct agctgtcctc cctcgtctcc ggagcctgac cctccatggg
      661 aaccccatag aggaagaaaa ggggtacagg cagtatgtgc tgtgcaacct gccccgtatc
      721 accacgtttg acttcagtgg agtcaccaag gccgaccgca gcacagcaga agtatggaaa
      781 cgcatgaata tcaagcccaa gaaggtccgg atcaagcagg atgtactctg agattcgcag
      841 gacccgagca cacctaatgc cctgaggatg atcagcttgg tttgacaata aatgatttga
      901 gctgttgaac agatt
//
