LOCUS       NM_001134469            2562 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 49 (Lrrc49), mRNA.
ACCESSION   NM_001134469 XM_001073479 XM_236333
VERSION     NM_001134469.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2562)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2562)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC160848.1.
            
            [WARNING] On Mar 12, 2025 this sequence was replaced by
            NM_001134469.2.
            
            On or before Sep 4, 2008 this sequence version replaced
            XM_236333.4, XM_001073479.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC160848.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMD00132261,
                                           SAMD00132262 [ECO:0006172]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2562
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q24"
     gene            1..2562
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /note="leucine rich repeat containing 49"
                     /db_xref="GeneID:300763"
                     /db_xref="RGD:1309466"
     exon            1..87
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     CDS             40..2100
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 49"
                     /protein_id="NP_001127941.1"
                     /db_xref="GeneID:300763"
                     /db_xref="RGD:1309466"
                     /translation="MIPGKYRSVSGRAANNVNCGLHLVIQTSSLSDKNKVEFKLNRET
                     PSFPGRLLQHDLERNYSSRQGDHINLVSSSMPSFPILQRSSEEKTLYSDRLTLERQKL
                     TVCPIIDGEEHLRLLNFQHNFITRIQNISNLQRLIFLDLYDNQIEEISGLSTLKSLRV
                     LLLGKNRIKKISNLENLKNLDVLDLHGNQITKIENVNHLCDLRVLNLARNLLSHVDNL
                     NGLDSLTELNLRHNQITFVRDVDNLPCLQRLFLSFNNITSFESVSCLAESTSLSDITF
                     DGNPIAQESWYKHTVLQNMMQLRQLDMKRITEEERRVASVVAKKEEEKKRESHKQSLL
                     KEKKRLTINNVARKWDLQQRVANIAIIQDRKDSESPPQESCQIDGGTISAFPEEAGSL
                     DAGLSSALQGLSVTETHLVELDGETLSLYGSGALECLDRNWSVQTAGMVTTVSFTFIE
                     FDEIVQVLPKLKMKFPNSLHLKFRETNLVMLQQFNALAQLRRVDQLTIDPQGNPVVNF
                     TLWKYYVLFRLSHFSMQKINGTEVTQNDMIMAERLFGILAHVASSELPQYRMISILGD
                     ARKKQFRYLLENKCKKPGILCEETSDSKRLMGENTNRATLNYTTREFYHEKLEEIKDK
                     KKFCRLYVEDLVKEATAINMKNEALQKLWPQMFIELVRDAVIEIRSKDSYMKLCLQQI
                     TDQK"
     exon            88..144
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            145..232
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            233..335
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            336..539
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            540..606
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            607..750
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            751..812
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            813..960
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            961..1044
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            1045..1208
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            1209..1446
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            1447..1632
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            1633..1742
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            1743..1896
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
     exon            1897..2545
                     /gene="Lrrc49"
                     /gene_synonym="RGD1309466"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctcgaagga ggatcgaaca tcctggactg tttcctgcca tgattcccgg gaaataccgc
       61 tccgtttctg gccgggctgc aaacaacgtg aactgtggac ttcatctggt tattcaaacg
      121 tcgtcacttt ctgacaaaaa caaagttgaa ttcaagctta atagagaaac accatcattt
      181 cctggtagac tgttacagca tgacctggag agaaactact caagtagaca aggtgatcac
      241 attaatctgg tgagctcatc aatgccatca tttcctattc tccagcgttc ttctgaagag
      301 aaaactcttt actcagacag gctgacccta gaaagacaaa agttgactgt gtgccctatc
      361 atcgacgggg aggagcacct tcgtttgttg aactttcagc acaattttat aactcggatc
      421 caaaatattt ctaatctaca gaggctaata ttcttggact tatatgataa ccagattgaa
      481 gaaattagtg ggctttccac tctgaaatcc cttcgtgtcc tcctgttagg gaagaacaga
      541 atcaagaaaa tctcaaatct ggagaatcta aaaaatttag atgtcttgga ccttcatgga
      601 aatcagatta ccaaaattga aaatgttaat catttgtgtg acttgagagt tttaaacctt
      661 gccaggaacc tcttgagtca tgttgacaat ctcaacggtc tggattcact aacagaactt
      721 aaccttcgcc acaaccagat caccttcgtg agagatgtgg ataatttgcc ctgcctccaa
      781 cgcctcttcc tcagcttcaa caatataact agctttgaaa gtgtttcctg ccttgctgag
      841 tcaacttccc tctcagacat cacctttgat ggcaatccaa tagctcaaga gtcatggtac
      901 aaacacacgg tccttcagaa tatgatgcag ctgcgccagc tagacatgaa gagaatcacg
      961 gaagaagaaa gacgcgtggc atctgttgtg gccaaaaaag aggaggagaa gaagagggag
     1021 agtcacaagc agtccttgct gaaggagaag aaaaggttaa caattaacaa cgtcgctcga
     1081 aagtgggact tgcagcaacg agtagccaat atcgccatca ttcaggacag aaaggactct
     1141 gagtctcctc ctcaggaatc ctgtcagatc gatggaggca ccatctccgc atttcccgag
     1201 gaagcagggt ctctagatgc gggactcagc agtgcgttac aaggcttgtc tgtcacagaa
     1261 acacacttgg tggagctaga tggagaaacc ctgtcactgt atggctcagg ggcgctggaa
     1321 tgcctagatc gtaactggag tgttcaaaca gctggcatgg tcaccaccgt ctcgttcaca
     1381 ttcatcgagt ttgatgaaat tgtccaagta cttcccaaac tgaagatgaa gtttccaaat
     1441 tctctgcacc ttaagttcag ggagaccaac cttgtgatgc tgcagcagtt caacgccctc
     1501 gcgcaacttc gtcgggttga ccagttgaca atcgatcctc agggaaaccc agtggtgaac
     1561 ttcacactct ggaagtacta cgtgctgttt aggctcagcc acttcagcat gcagaaaata
     1621 aatggaacag aggtgacaca aaatgacatg ataatggctg aaaggctctt tggaatctta
     1681 gcacatgtgg catcctctga gctgccccag taccgcatga tttcaattct gggtgatgcc
     1741 aggaaaaagc agttccggta tctgctggag aacaaatgta aaaagcctgg catcctctgt
     1801 gaggagacga gtgacagcaa gagattaatg ggggaaaaca caaaccgagc taccctgaat
     1861 tacaccaccc gagaattcta ccacgagaag ctggaggaaa taaaggacaa gaagaagttc
     1921 tgcaggttgt atgtagaaga cctggtgaag gaagccacag ccatcaacat gaaaaatgag
     1981 gctctgcaga agctgtggcc acagatgttc atcgagcttg tcagggatgc cgtcatagag
     2041 atccgcagca aggactccta catgaagctc tgcctgcagc agatcactga ccagaaatag
     2101 ggatggctca tgcttcagac atgggcaatt ggagctgttt taaagttggg caagatgcag
     2161 gttagacatg atgagacatc accacttccg cacatactag aaagagcggc atcaaagcct
     2221 cgccccctgc actgttgagg aggagggagg caggagagag ggggactctt tcccacgcat
     2281 gctgaccaca caaccttggg gacccgagca gcaactggag aaggcctggc tgctgggtca
     2341 gaaatgcttc ttcagctcct gctctgactg gtgtgcctgc ccccgtccca ggcacagtgc
     2401 gtgctgatgg gcaagcatga gacgcctcta ccaacctcca gctgagactt ttctcttatt
     2461 ttgccttttt attttatgtc atgatttcaa agccaagctt atgttctttt ttatgagtga
     2521 aaaataaata cattagtaaa aaaaaaaaaa aaaaaaaaaa aa
//
