LOCUS       NM_001135666            2893 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 47 (Lrrc47), mRNA.
ACCESSION   NM_001135666 XM_001076460 XM_342990
VERSION     NM_001135666.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2893)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 2893)
  AUTHORS   Florea,L., Di Francesco,V., Miller,J., Turner,R., Yao,A.,
            Harris,M., Walenz,B., Mobarry,C., Merkulov,G.V., Charlab,R.,
            Dew,I., Deng,Z., Istrail,S., Li,P. and Sutton,G.
  TITLE     Gene and alternative splicing annotation with AIR
  JOURNAL   Genome Res 15 (1), 54-66 (2005)
   PUBMED   15632090
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On or before Oct 5, 2008 this sequence version replaced
            XM_342990.3, XM_001076460.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR22582416.148607.1,
                                           SRR22582419.2640907.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-618               JAXUCZ010000005.1  169852963-169853580
            619-1071            JAXUCZ010000005.1  169857449-169857901
            1072-1188           JAXUCZ010000005.1  169858978-169859094
            1189-1304           JAXUCZ010000005.1  169859838-169859953
            1305-1407           JAXUCZ010000005.1  169860347-169860449
            1408-1497           JAXUCZ010000005.1  169860981-169861070
            1498-2893           JAXUCZ010000005.1  169861203-169862598
FEATURES             Location/Qualifiers
     source          1..2893
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..2893
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /note="leucine rich repeat containing 47"
                     /db_xref="GeneID:362672"
                     /db_xref="RGD:1308599"
     CDS             1..1743
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 47"
                     /protein_id="NP_001129138.1"
                     /db_xref="GeneID:362672"
                     /db_xref="RGD:1308599"
                     /translation="MAAAMAVSEAWPELELAERERRRELLLTGPGLEERVKAAGGRLP
                     PRLFTLPLLHYLEVSGCGSLRAPGPGLAQGLPQLHSLVLRRNALGPGLSPELGPLPAL
                     RVLDLSGNALETLPPGEGLGPAEPPGLPQLQSLNLSGNRLRELPADLARCAPRLQSLN
                     LTGNCLDSFPAELFRPGALPLLSELAAADNCLRELSPDIAHLASLKTLDLSNNQLTEI
                     PAELADCPKLKEINFRGNRLRDKRLEKMVGGCQTKSILEYLRAGGRGGRSKGRQEGSE
                     KEDRKKKRDRKQRRESGEGEEEVADSARLMLKVLHVSENPTPLTVRVSPEVRDVRPYI
                     VGAVVRGMDLQPGNALRRFLNSQTKLHDDLCEKRTAATIATHDLQAVRGPLLYAARPP
                     EDLKIVPLGRKEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLDGKENYPCLV
                     DAEGDVISFPPITNSEKTKIKRTTCSVFLEVTSATSLQLCKDIMDSLVLKMAELNKST
                     SENKEEDMLSGTETDASHGLSDPNLNPRAGKDGQCPLVVEQVRVVDLEGSLKVVYPSK
                     ADLVTLPPYVTVVR"
     exon            1..618
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /inference="alignment:Splign:2.1.0"
     exon            619..1071
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /inference="alignment:Splign:2.1.0"
     exon            1072..1188
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /inference="alignment:Splign:2.1.0"
     exon            1189..1304
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /inference="alignment:Splign:2.1.0"
     exon            1305..1407
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /inference="alignment:Splign:2.1.0"
     exon            1408..1497
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /inference="alignment:Splign:2.1.0"
     exon            1498..2893
                     /gene="Lrrc47"
                     /gene_synonym="RGD1308599"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggcggcgg ctatggcagt gtccgaggcc tggccagagc tggagctggc ggagcgcgag
       61 cgacgtcgcg agctgctgct gactgggcct gggctggagg agagggtgaa ggcggcgggc
      121 gggcggctgc cgccgcggct cttcacgcta ccgctgctgc actacctcga ggtaagcggc
      181 tgcggcagtc tgcgcgcccc ggggcccggc cttgcgcagg gcctgccaca gctgcacagc
      241 ctggtattgc ggcgtaacgc gctgggtccc ggcctgagcc ctgagctggg gccgctgccc
      301 gcgctgcgcg tgctcgacct gtcgggcaac gcgctggaga cgctaccgcc gggcgagggc
      361 ctgggccccg ccgagccccc gggtctgccg cagctacaga gcctcaacct cagcggcaac
      421 cgcctgcgcg agctgcccgc cgacctggcg cgctgcgccc ctcgcctgca gagcctcaac
      481 ctcaccggca actgcttgga ctccttcccc gccgaactct tccggccagg agctctgccc
      541 ctgcttagtg agctggcagc tgcggacaac tgcctgcggg agctcagccc agacatcgca
      601 cacctggctt cgctcaagac actggatctc tctaacaacc agctgacaga gatccctgct
      661 gaactggcag actgccccaa gctcaaagag atcaactttc gagggaacag gcttcgagac
      721 aagcgcctgg agaagatggt gggtggctgc cagactaagt ccatcctaga gtacctgcgt
      781 gctggtggcc gtggcggtcg gagcaagggc cggcaagagg gctctgagaa ggaggacaga
      841 aagaagaagc gggatcggaa gcagcgtcgg gagagtgggg agggcgagga ggaagtagca
      901 gactcagcca ggctgatgct caaggtcttg cacgtctcgg agaaccccac gcccctgaca
      961 gtcagggtga gcccggaggt cagggacgtg cgtccataca ttgtgggggc cgtcgtgaga
     1021 ggcatggacc tgcagccagg aaatgcactc cgtcgcttcc tcaactccca gacgaagctc
     1081 catgacgacc tctgtgagaa gaggacagca gcgaccatcg cgacccatga cctacaagct
     1141 gtgcgtggac ccctgctgta tgcagcgcgg cctccagagg acctcaagat tgtgcctttg
     1201 gggcggaaag aggccaaggc caaggagctg gtgcggcagc tgcagctaga ggctgaggaa
     1261 cagagaaagc agaagaaaag acagagtgtc tcagggctgc acagatacct tcacctcctg
     1321 gatgggaagg agaactaccc ctgtcttgtg gatgccgagg gagacgtgat ctctttccct
     1381 cctataacaa acagtgagaa gacaaagatc aagagaacaa cctgcagtgt gttcttggaa
     1441 gtgacaagtg ccaccagcct gcagctctgc aaggacatca tggacagcct cgtcctgaaa
     1501 atggcagaac tgaacaaaag cacttcagaa aataaagagg aagacatgct ctcagggaca
     1561 gagactgatg ccagccatgg gctttctgat cccaacttga atccgagagc tgggaaggat
     1621 ggacagtgcc ccctggtggt ggagcaggtc cgagtggtgg acctggaagg cagcttgaaa
     1681 gtggtgtacc catccaaggc cgacctggtc accctccctc cctatgtgac cgtggttcgc
     1741 tgacgatggt ccaggctgca tcagtctgcc cacctgtggc tcctgtaggt gtgctgtaga
     1801 tgtctgtgtg accggtggtt gttctccctt tcactgggtg ttttgaggtg tctgcttttg
     1861 tccaggtgac tgtgtgatgt gaatctgtca tcgttatagc tctggtatga tcctcctgtc
     1921 tactgtcctc atggatcatt caaataactg ctgaaagtgt tctgaatcat gtggccagta
     1981 actaggagag gcaccaagcc tggtgcgcgc gctgtgccct gtaagttcag gctggatggc
     2041 aggcagtcta ttgaacggta tttatttttc tacaacatgt taatagcatt ttttttcaac
     2101 atcagctgtg caaagacagt tgagagcatc atgttgtgat catagtctta gagcttgttt
     2161 ctgggcacag tgctgctgcc atggtcctcg ggcagcatct gccttccaca gctgtgcttc
     2221 caactggagt gctggtcatt gttggcacat ctgtgccggg gccacagaag tcagccatgc
     2281 ccatgtagtc ctgtgtagcc agccagtggt ctgtgagtgg gtgggaaggc tggtgtgtgg
     2341 actgtcatac ggtagctgag gaaggagtgc cgcccaccag gccctgcagg ctcaacacag
     2401 cctgtctctc tgtgcatgtg ctggtgtgta cccagcacac agctgccatt cctggagcca
     2461 cagtgcttga tcctaaggac ccagccagct gcagaaagga cttggtggcc ccatgcctta
     2521 ccagacctca gtggtggtct ctgacctcaa aggacaattt ctatcttctg taaaagaacg
     2581 actgttgggg ttgtttccgg gttctattct gttctaaggg tatgcgagag cctttagctg
     2641 ccagatctag tgaggctcca ggcccctcat ggcagaccct ggacaaagct ggtggttgtg
     2701 gcaaaaactt acctaagcgt ttagggtgga gctgccctgt gcccaccctg tttctcccca
     2761 gttcctgctc tcccaaacct ccatccagca cagccccggt gtgagactca ttgagatttt
     2821 tggaactgtt tttacattgc aagcagaatg cctctttgtt ctaataaaac taataaaaaa
     2881 cccttggtaa caa
//
