LOCUS       NM_001025653            1696 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 42 (Lrrc42), mRNA.
ACCESSION   NM_001025653 XM_216457
VERSION     NM_001025653.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1696)
  AUTHORS   Gerhard,D.S., Wagner,L., Feingold,E.A., Shenmen,C.M., Grouse,L.H.,
            Schuler,G., Klein,S.L., Old,S., Rasooly,R., Good,P., Guyer,M.,
            Peck,A.M., Derge,J.G., Lipman,D., Collins,F.S., Jang,W., Sherry,S.,
            Feolo,M., Misquitta,L., Lee,E., Rotmistrovsky,K., Greenhut,S.F.,
            Schaefer,C.F., Buetow,K., Bonner,T.I., Haussler,D., Kent,J.,
            Kiekhaus,M., Furey,T., Brent,M., Prange,C., Schreiber,K.,
            Shapiro,N., Bhat,N.K., Hopkins,R.F., Hsie,F., Driscoll,T.,
            Soares,M.B., Casavant,T.L., Scheetz,T.E., Brown-stein,M.J.,
            Usdin,T.B., Toshiyuki,S., Carninci,P., Piao,Y., Dudekula,D.B.,
            Ko,M.S., Kawakami,K., Suzuki,Y., Sugano,S., Gruber,C.E.,
            Smith,M.R., Simmons,B., Moore,T., Waterman,R., Johnson,S.L.,
            Ruan,Y., Wei,C.L., Mathavan,S., Gunaratne,P.H., Wu,J., Garcia,A.M.,
            Hulyk,S.W., Fuh,E., Yuan,Y., Sneed,A., Kowis,C., Hodgson,A.,
            Muzny,D.M., McPherson,J., Gibbs,R.A., Fahey,J., Helton,E.,
            Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M.,
            Madari,A., Young,A.C., Wetherby,K.D., Granite,S.J., Kwong,P.N.,
            Brinkley,C.P., Pearson,R.L., Bouffard,G.G., Blakesly,R.W.,
            Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J.,
            Myers,R.M., Butterfield,Y.S., Griffith,M., Griffith,O.L.,
            Krzywinski,M.I., Liao,N., Morin,R., Palmquist,D., Petrescu,A.S.,
            Skalska,U., Smailus,D.E., Stott,J.M., Schnerch,A., Schein,J.E.,
            Jones,S.J., Holt,R.A., Baross,A., Marra,M.A., Clifton,S.,
            Makowski,K.A., Bosak,S. and Malek,J.
  CONSRTM   MGC Project Team
  TITLE     The status, quality, and expansion of the NIH full-length cDNA
            project: the Mammalian Gene Collection (MGC)
  JOURNAL   Genome Res 14 (10B), 2121-2127 (2004)
   PUBMED   15489334
  REMARK    Erratum:[Genome Res. 2006 Jun;16(6):804. Morrin, Ryan [corrected to
            Morin, Ryan]]
REFERENCE   2  (bases 1 to 1696)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from BC098685.1.
            
            On Jul 22, 2005 this sequence version replaced XM_216457.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098685.1, SRR8487227.175420.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q34"
     gene            1..1696
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /note="leucine rich repeat containing 42"
                     /db_xref="GeneID:298309"
                     /db_xref="RGD:1308919"
     exon            1..172
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
     exon            173..659
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
     CDS             187..1452
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 42"
                     /protein_id="NP_001020824.1"
                     /db_xref="GeneID:298309"
                     /db_xref="RGD:1308919"
                     /translation="MAYYLNSEAHLDPGPIYVRENGQLHMVSLALDGVKNSLQKPRPF
                     RLFPKGFSVELCMNREDDTAQKEKTDHFIFTYTREGNLRYSAKSLFSLVLGFISDNVD
                     HIDSLIGFPEQIAEKLFSAAEARQKFTEPGAGLRALQKFTEAYGSLVLCSLCLRNRYL
                     VVAEKLEEIKSFRELTRLDLSCCWLGDEHELLEHLTNEALSSVTQLHLKDNCLSDAGI
                     RKMTAPVRVLKRGLENLTLLDLSCNPEITDAGIGYLFSFRKLNCLDISGTGLKDIKAV
                     KDKLRTHIGLVHSKVPLKEFDHSNCKTEGWADQIVLQWERVSVEAVRQRKDPEPRKAA
                     QYFYQKRALTEASRKCPLAETHMNSSGKLQFYREKAPDCHEPLLSQESKKSKKRAFEE
                     SEQEQSSPQSAKQKCVCLAVEDWDLLNSY"
     exon            660..791
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
     exon            792..910
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
     exon            911..999
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1113
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
     exon            1114..1198
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
     exon            1199..1673
                     /gene="Lrrc42"
                     /gene_synonym="RGD1308919"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcccgcggc gccaggtcgc cccccagccc ctccctcttg ccaccctgtg tgtgtgtccc
       61 accctcacgg gctttgtggc ctaggtgctg agccgcttcc tggtcagccg ctcagtggag
      121 gaaggagccg cctgtgaggt gcagccgctc gctgccccgg gcaggggcac agttgcaacc
      181 aaggcaatgg cttactacct caactcagaa gcccacctgg atccggggcc catctatgtt
      241 cgagaaaatg ggcagctcca catggtcagt ctggccttgg atggtgttaa gaacagcctg
      301 cagaagccac ggcctttcag actctttccc aaaggctttt ctgtggagct atgcatgaac
      361 agggaagacg acactgcaca gaaagagaaa actgatcact tcattttcac gtacacccga
      421 gaggggaatc tgcgctactc tgctaaatcc ctcttcagcc tggtgctggg cttcatctcc
      481 gacaatgttg atcacattga ttcccttatt ggctttcctg agcagattgc tgagaagtta
      541 ttttctgctg ctgaagccag acagaaattc acagagccag gtgcagggct gagggcttta
      601 cagaaattca ctgaggccta tggaagtctg gtgctttgct cactgtgctt gcgaaacagg
      661 tatttggtgg ttgcagaaaa acttgaagag atcaagtctt tccgggagct gacccgcctg
      721 gatctatctt gttgctggct tggagatgag catgaacttc tagaacatct caccaatgag
      781 gccctgtcca gtgtaactca gctccacttg aaggataatt gcttatcaga tgcaggcatt
      841 cggaaaatga cagcgccagt acgggtgctg aaaagaggcc ttgagaatct aacgctgtta
      901 gacctgtctt gtaaccctga gataacagat gctggaattg gatacctatt ttcttttaga
      961 aaactaaact gcttggatat ctctggaaca ggactaaagg atatcaaagc cgttaaggac
     1021 aagctccgga cacacatagg ccttgttcac tccaaagtgc ctttgaagga atttgatcac
     1081 agtaactgta aaacagaggg ctgggctgac cagattgtcc tgcagtggga gcgagtgagc
     1141 gtggaagcgg tgcggcagcg gaaagatccg gagcctcgaa aggcagctca gtacttctat
     1201 cagaagcgag ctctcacaga agcttcaagg aaatgtcccc tagcagagac ccacatgaac
     1261 tcttctggaa aactccagtt ctatagggag aaggctccgg actgccatga gccactgttg
     1321 agccaagaat caaagaagag caaaaagaga gctttcgagg agtcagagca ggagcagagc
     1381 tcgccgcagt cagctaagca gaagtgtgtg tgtctggctg tggaagactg ggatttgctc
     1441 aattcctact gactgacaca tacagttgat accccctcac ctcagcacat gagatgtgga
     1501 ggactgctgg tgattttctt ttggtttgga tttacctttg gcattagcat agcaagcaga
     1561 tatttctact tttgtggtgg gggagggaag gctatggacg tctgtaataa tttctaatgt
     1621 atattttcaa tacatagtaa ttttttcaaa taaactcttt tgctctcgtt gaaaaaaaaa
     1681 aaaaaaaaaa aaaaaa
//
