LOCUS       NM_001034926            2637 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 40 (Lrrc40),
            transcript variant 1, mRNA.
ACCESSION   NM_001034926 XM_001078514 XM_006233538 XM_227795
VERSION     NM_001034926.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2637)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On or before Jan 10, 2022 this sequence version replaced
            XM_006233538.4, NM_001034926.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643289.8143.1,
                                           SRR26643293.15194.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: full length.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-174               JAXUCZ010000002.1  249760354-249760527
            175-356             JAXUCZ010000002.1  249764077-249764258
            357-430             JAXUCZ010000002.1  249765189-249765262
            431-560             JAXUCZ010000002.1  249767213-249767342
            561-684             JAXUCZ010000002.1  249772090-249772213
            685-827             JAXUCZ010000002.1  249775493-249775635
            828-1000            JAXUCZ010000002.1  249776589-249776761
            1001-1088           JAXUCZ010000002.1  249778873-249778960
            1089-1134           JAXUCZ010000002.1  249779076-249779121
            1135-1243           JAXUCZ010000002.1  249779841-249779949
            1244-1351           JAXUCZ010000002.1  249781451-249781558
            1352-1462           JAXUCZ010000002.1  249784139-249784249
            1463-1540           JAXUCZ010000002.1  249785552-249785629
            1541-1726           JAXUCZ010000002.1  249786298-249786483
            1727-2637           JAXUCZ010000002.1  249788987-249789897
FEATURES             Location/Qualifiers
     source          1..2637
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q45"
     gene            1..2637
                     /gene="Lrrc40"
                     /note="leucine rich repeat containing 40"
                     /db_xref="GeneID:310946"
                     /db_xref="RGD:1562017"
     exon            1..174
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     CDS             24..1832
                     /gene="Lrrc40"
                     /note="isoform 1 is encoded by transcript variant 1;
                     leucine-rich repeat-containing protein 40"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 40
                     isoform 1"
                     /protein_id="NP_001030098.2"
                     /db_xref="GeneID:310946"
                     /db_xref="RGD:1562017"
                     /translation="MSRQLRAPRSDPRAGFRTESKDRGPTVPQGLLKAARSSGQLNLA
                     GRNLGEVPQCVWRINVDIPEEANQNLSFSSTERWWEQTDLTKLIISSNKLQSLSDDLR
                     LLPALTVLDIHDNQLTSLPSAIRELDNLQKLNVSHNKLKMLPEEITSLKNLKALHLQH
                     NELTCIPEGFEHLSSLEDLDLSSNRLATVPADFALLSNLLRLNLSSNQLKNLPAEISR
                     MKRLKHLDCDANLLETVPPDVGSMESLELLYLRRNKLRVLPEFPSCRQLKELYLAENQ
                     IEKLGAEHLQHLQAILVLDLRSNKLRSVPEEMALLQSLERLDLSNNDISSLPCSLGNL
                     HLKFLALEGNPLRTIRREIIAKGTQEVLKYLRSKIKDDRTNQNDSVPETAMTLPSEAR
                     VNIHAIVTLKLLDYSDKQATLIPDDIFDATKNTVVTSINFSKNQLCEIPQRIAELKEM
                     VLDVNLSFNKLSLVSHELCLLQKLAFLDLRNNFLSSLPEEMSSLTKLQTINLSFNRFK
                     VFPAVLYHISTLETILISNNQVGSVDPLKMKLMENLSTLDLQNNDLLQIPPELGNCVQ
                     LRTLLLDGNPFRVPRAAILMKGTAAVLEYLRDRIPA"
     exon            175..356
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            357..430
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            431..560
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            561..684
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            685..827
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            828..1000
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1001..1088
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1089..1134
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1135..1243
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1244..1351
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1352..1462
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1463..1540
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1541..1726
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
     exon            1727..2637
                     /gene="Lrrc40"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcttcctgtc tgagcttttg aatatgtcgc gccagctgag ggcccctagg tctgaccctc
       61 gtgcgggatt ccgcacagag agcaaggaca gaggccccac tgtcccccag ggcctgctga
      121 aggcagcgag gagcagcggc caactcaacc tggcgggaag gaacctcggg gaagtccctc
      181 aatgtgtttg gagaataaat gtggacattc ccgaagaggc taatcagaat ctttcattca
      241 gttctactga acgatggtgg gaacagacag atctgaccaa actcatcatc tccagcaata
      301 aacttcagtc tctctctgat gacctccgac tcttgcctgc ccttactgtt cttgatatac
      361 atgataatca gctgacatct ctgccttcag ctataagaga gctagacaat cttcagaaac
      421 ttaatgtcag ccataacaaa ctgaaaatgc tgcctgaaga aattacaagc ttaaaaaacc
      481 tgaaggcgct gcacctccag cacaatgagc tgacttgcat acctgagggg tttgaacacc
      541 tttccagctt agaagattta gatctttcaa gcaatcgtct tgcaaccgtg cctgctgatt
      601 ttgctttgct gtccaatctg ctgcgactca atctttccag taaccagctg aagaatttgc
      661 cagcagaaat aagcagaatg aaaagattaa agcatttgga ttgtgatgcc aatctccttg
      721 agactgtgcc tcctgatgtg ggcagcatgg aatcactgga attgctttat ttgcgaagga
      781 ataaattacg agtcctacct gagtttcctt cttgtaggca actaaaggaa ttgtacttag
      841 ctgagaacca gatcgagaag ttaggggcag agcatcttca acacctgcag gccattcttg
      901 tgctggacct aaggagcaac aagctgaggt ctgttcctga ggaaatggcc ctgctgcagt
      961 ctttggaaag gcttgacctg agcaacaatg atattagtag tctgccctgc tcactgggaa
     1021 atcttcattt gaaatttctg gcactagaag gaaatcctct aagaaccatt cgaagagaaa
     1081 ttatagctaa aggaacgcaa gaagtcctaa aatacctgcg gagcaagatc aaagatgata
     1141 gaaccaatca aaacgattct gttcctgaga ctgccatgac actaccaagt gaagccagag
     1201 tcaatatcca tgccatagtc acactaaagc tgctggatta tagtgataaa caagcaacct
     1261 tgattcctga tgacattttt gatgccacaa aaaacacggt cgtcacttcc atcaacttca
     1321 gcaagaatca gctgtgtgag attccacaaa ggattgctga gctgaaggag atggtgctag
     1381 acgtcaacct cagtttcaac aagctttctc ttgtgtccca tgagctgtgc ctgcttcaga
     1441 agttggcatt tctagattta aggaataatt ttttaagttc tttgcctgaa gagatgtcat
     1501 cactgacaaa actacaaaca atcaatcttt cctttaacag gttcaaagtg tttcctgcag
     1561 ttctgtatca catctccaca ctggaaacaa ttctgatcag caacaatcag gttggctctg
     1621 tggaccctct gaagatgaag ctgatggaaa atctgagtac tctagacctt caaaacaacg
     1681 accttttgca gattccccca gagcttggga actgtgtgca gctacggaca ctactgctag
     1741 atggaaatcc cttccgagtt cctcgagcgg ccatattgat gaagggcaca gctgcggtgc
     1801 tggagtattt gagagatcga atccctgcct gagtacagct ggccttgaac tctgggcatg
     1861 gtcccttgtc ccaggtggca ctaggcagtc actgggctgt tcattcccct aaatgtctac
     1921 agtttgtgaa gtgctgtgaa catttataat gatgtcaact acaatagatt gtagaggttc
     1981 tataaattca ttcccttatg acattgcaag aactttcatt tcatatgagt taatatttta
     2041 tagtgatgca gcaaacatct ttgtagaact ggttccacct ggtgtctttg tattttccat
     2101 ataatgtaaa ctgagcagga ccatataggt gtaaagtcag caaattttta ctgactatta
     2161 ttctttggca tttaaaagaa aatcagactt tctttgtcca ggataggact tgctatgtgc
     2221 tcagtgccac tgcatgttta tgtttagagt tttgggtttg actttaaaaa aaattatttt
     2281 taaatgtttt gggtgtcctt tattccaatg tggtacatct tatttctaaa accttggttc
     2341 tgaaatctgc ttacagtcgg attaaaacta gactggcagt tttaccgtaa ttttctaaaa
     2401 aggggttaga tatatgtaaa cttgatttaa taaaaatcca aatataaaca ttgttgttta
     2461 cactgaagtt atcagatgca gctcttacag ccgtcctgat tcatcatgtg attgtgtcag
     2521 catgcagagg gcggagatag ggaccatatg gtggttgagg ttgttgacct tagggaaagt
     2581 cagtgctaat aaacatacat gcttcatgtt cataataaaa gttacatatt taaggta
//
