LOCUS       NM_001004088            2410 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 36 (Lrrc36), mRNA.
ACCESSION   NM_001004088 XM_341674
VERSION     NM_001004088.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000019.1.
            
            On Jan 1, 2010 this sequence version replaced NM_001004088.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1892091.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-89                JAXUCZ010000019.1  50201987-50202075
            90-217              JAXUCZ010000019.1  50215250-50215377
            218-410             JAXUCZ010000019.1  50216667-50216859
            411-507             JAXUCZ010000019.1  50217621-50217717
            508-596             JAXUCZ010000019.1  50221441-50221529
            597-724             JAXUCZ010000019.1  50232352-50232479
            725-773             JAXUCZ010000019.1  50234801-50234849
            774-1220            JAXUCZ010000019.1  50238353-50238799
            1221-1513           JAXUCZ010000019.1  50241014-50241306
            1514-1679           JAXUCZ010000019.1  50244174-50244339
            1680-1828           JAXUCZ010000019.1  50245960-50246108
            1829-1952           JAXUCZ010000019.1  50246805-50246928
            1953-2067           JAXUCZ010000019.1  50249323-50249437
            2068-2410           JAXUCZ010000019.1  50251996-50252338
FEATURES             Location/Qualifiers
     source          1..2410
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="19"
                     /map="19q12"
     gene            1..2410
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /note="leucine rich repeat containing 36"
                     /db_xref="GeneID:361394"
                     /db_xref="RGD:1303118"
     exon            1..89
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..2293
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /note="LRRC36 homolog; heat shock regulated 2"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 36"
                     /protein_id="NP_001004088.3"
                     /db_xref="GeneID:361394"
                     /db_xref="RGD:1303118"
                     /translation="MAEQWDLDEECLRRLGALTLEQPELVESLSLQGSYAGKIHSIGD
                     AFRNFKNLRSLDLSRNLITSLKGIQYLCSLQDLNLYYNNIPSLVEVSRLQPLPFLKEL
                     DLRLNPVVRKDTDYRLFAVYTLQMLEKLDDRAVRDSERRAAKLHFSQLGSSENFLLEV
                     EKSSREKTMKNCVTDEGPASHVSSEVDTRMETDSNKGLFISFPNREIKDSLASICATQ
                     GSGTPAQKLDVFPLETQMQEATRRETSDLHQEDGLELRHYSPHQGTVRSPEKMTRDGY
                     RVSFLDTKSSGSSPVKDLIPKPDAYPCTHDASLGKRLDVGDSNQILPCQLPSGVCLDH
                     YDNHYSQTLCLHGSLVKRPQKGKYYREYSTKPSNDKKAASSLSCGDLLTSLSNPDCST
                     GRPLKLSSDLYATTRFNSDHALLANVEQQLSSLGDFAPAPGSFPSNPALGNSLRTLLL
                     PPGTPENREIPTKRSLSPSRRGFKRKDNILANLNLKRGFQDATGSEVQPFSSDLGSLH
                     GLSGNRSPPISARTPHVATVLRQLLELVDKHWNGSGSLLLNKKFLGPARDLLLSLVVP
                     APPQQWHRSLLDDKTGRALHWRETELKEAGQLVPSDVESLKQKLVKVLEENLILSEKI
                     QQLEGAAATSVVSGHPSHTHDDLLHKNQQLTIQVACLNQELTQLKRLEETVALLHESQ
                     RSLVVTNEYLLQQLNKEQKGYSGKSLLPPEKTHPLGRLSPFGKSTLSSSSPTVHNTGQ
                     YLIQSVSEADPEPSLWS"
     exon            90..217
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            218..410
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            411..507
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            508..596
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            597..724
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            725..773
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            774..1220
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1513
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1514..1679
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1680..1828
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1829..1952
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            1953..2067
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
     exon            2068..2410
                     /gene="Lrrc36"
                     /gene_synonym="Xlhsrf2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aggtgagcgg cgggagcgaa tggcggagca atgggatctg gacgaggagt gcctccgccg
       61 cctgggggcg ctgaccctcg agcagccgga actggtggag tctctctcat tgcagggatc
      121 ttatgctgga aaaatccact ctattggtga tgccttcaga aatttcaaaa atctccgatc
      181 cttagattta tcaaggaatt tgatcactag tctgaagggc atccagtatc tatgttcact
      241 ccaagatctg aacttatatt ataacaacat tccttcatta gtggaggtgt cccgactaca
      301 gcccttaccc ttcctcaaag aactagattt gagactcaat cctgttgtaa ggaaagatac
      361 agattatagg ctctttgctg tgtacacact gcaaatgctg gagaaactgg atgaccgagc
      421 tgtccgtgac agtgagagga gagcggccaa gctacatttc agtcagttgg gcagcagtga
      481 aaattttctc ctagaggtgg aaaaaagctc tagggagaag acaatgaaaa actgtgtgac
      541 agatgagggc cctgcatcac acgtcagttc tgaggttgac accagaatgg aaacagactc
      601 aaacaaagga ctttttattt ccttccccaa ccgggaaata aaggattccc tagcaagcat
      661 ttgtgcaacc cagggcagtg gcacaccagc tcagaaatta gacgtttttc cactggagac
      721 acagatgcag gaagcaacaa gaagggagac aagtgacctc caccaggaag atggattgga
      781 actcaggcat tactcgcctc atcagggcac agtccgatct ccagagaaga tgacaagaga
      841 tggataccga gtatcttttt tagacactaa gtcttcaggt tcttctccag taaaggactt
      901 gataccaaaa cctgatgcct atccgtgtac ccatgatgcc tctttgggta aacgtctgga
      961 tgtgggtgat tctaaccaga tccttccctg ccaattacct tctggtgttt gtctggacca
     1021 ttatgataat cattattctc aaactctttg cctgcacgga agtcttgtca aaaggcctca
     1081 aaaaggcaag tactatcgag aatacagcac aaagccttcc aatgataaaa aggccgcttc
     1141 atccctttcc tgtggagacc tgctaacatc cctgtcaaac cctgactgca gcacaggaag
     1201 gccattgaag ctcagttcag atctctatgc cacaacccgt ttcaacagtg accatgctct
     1261 gctggccaat gtagagcaac agctgtccag cctcggtgat tttgcaccag cacctggttc
     1321 cttcccaagc aaccctgccc taggaaattc tctgcggaca ctgctgttgc ctcctgggac
     1381 tccagaaaac agagagattc caactaagag gtcattaagc ccttcaagga gaggattcaa
     1441 gcggaaggac aatatccttg ccaacctgaa tctgaaacgt ggtttccaag atgctacagg
     1501 cagcgaggtg caacctttct ctagtgacct gggcagtttg catggtttat caggaaaccg
     1561 tagtcccccg atctctgcca gaacacccca cgtagccact gtcctcagac agctcctgga
     1621 gctggtggat aagcactgga atggttctgg ctcccttctc ctcaacaaga agtttcttgg
     1681 tcctgccaga gatttgctcc tgtccttggt ggtgcctgca cctccccagc agtggcatcg
     1741 ctcgctgctt gacgacaaga cagggagagc cttgcactgg agggagacgg agctaaagga
     1801 agcagggcag ctggttccca gtgatgtgga aagtttgaag caaaaactgg tcaaagtgtt
     1861 ggaagaaaac cttattttgt cagaaaaaat tcagcagttg gagggagctg ctgccacctc
     1921 ggttgtgagt gggcacccat ctcacacaca cgatgatctt ctgcacaaaa accaacagct
     1981 gaccatacag gtggcttgcc tgaaccagga gctgactcag ctgaaaaggc tggaggagac
     2041 agttgctctt ctccatgaga gtcagaggtc cctggtggta actaatgagt atctgctgca
     2101 gcagctgaat aaagagcaga aaggttattc cgggaaatcg ctcctgcctc ctgagaagac
     2161 tcatcctttg gggagattgt cgccctttgg gaaaagcact ctgtcttcct cctcaccaac
     2221 ggtacacaac acgggtcagt acctaataca gagtgtctca gaagctgacc ctgagcctag
     2281 tctgtggagc tagcaccaca gccttcccca ccactccctc acccatggag gtaactcagc
     2341 cctactgtcc ctgtagtgga tactggtgtt tatccccaaa gattaagaaa aacttattat
     2401 gattacatta
//
