LOCUS       NM_001108486            2914 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 28 (Lrrc28), mRNA.
ACCESSION   NM_001108486 XM_001057864 XM_341870
VERSION     NM_001108486.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Gaudet P, Livstone MS, Lewis SE and Thomas PD.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473980.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001057864.1, XM_341870.3.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132263
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q22"
     gene            1..2914
                     /gene="Lrrc28"
                     /note="leucine rich repeat containing 28"
                     /db_xref="GeneID:361588"
                     /db_xref="RGD:1307209"
     exon            1..115
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            116..343
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     CDS             176..1279
                     /gene="Lrrc28"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 28"
                     /protein_id="NP_001101956.1"
                     /db_xref="GeneID:361588"
                     /db_xref="RGD:1307209"
                     /translation="MASELCKTISVARLEKHKNLFLNYRNLHHFPLELLKDEGLQHLE
                     RLYMKRNSLTTLPENLAQKLPNLVELYLHSNNIVVVPEAIGSLVKLQCLDLSDNALEI
                     VCPEIGRLRALRHLRLANNQLQFLPPEVGDLKELQTLDISTNRLLALPERLHLCLSLQ
                     YLTVDRNRLWCVPRHLCQLPSLNELSMAGNRLASLPVDLGRSRELQYVYVDNNVNLKG
                     LPSYLYNKVIGCNGCGIPIQLSEVRLLTFSSGELTVFLPAEVKAIGTEKDHVLPLQEL
                     TMRSLHRTYHGLWKDLNFLSPISLPKSLLELLHCPLGHCHRCSEPMFTFVYPKLFPLR
                     ETPMAGLHQRRTSIGFVAYCCSAQCLRTFNLLC"
     exon            344..384
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            385..422
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            423..560
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            561..767
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            768..870
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            871..1046
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1206
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
     exon            1207..2914
                     /gene="Lrrc28"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgttagtca ggcccgcctc tccgcaggct ccgcccccgt agccccgccc tccctgtttc
       61 tggactgcct tccagcgcag catgagccgc tgagagctgg tcagcgggcg cctagaaatg
      121 gaccaatttt gacaagatgt agtgcggtag cactcctggt tggacatgtt cagtcatggc
      181 atccgaactc tgtaagacga tctctgtggc caggcttgaa aagcacaaga atttgttctt
      241 aaattacagg aacctgcacc attttccact ggagttactg aaagatgagg ggctgcagca
      301 cctggagagg ctctacatga aaaggaactc cctcacaacc ttgccagaaa accttgctca
      361 gaagcttcca aaccttgtgg aactgtacct tcactcgaat aacatagttg tggttccaga
      421 agccatcggg tcccttgtga aactccagtg tctggatctc agtgacaatg ccttagagat
      481 cgtttgccca gagattggtc gtctgagagc gttacgtcat cttcgattgg ctaataacca
      541 gctacaattc ctacctccag aggttggcga tttgaaggag ctgcagacac tagacatttc
      601 taccaaccgt ttgctagctt tacccgagag gcttcacctg tgcctttctc tgcagtacct
      661 cactgtggac cgcaatcggc tctggtgtgt gccgcgtcat ctctgccagc tgcccagcct
      721 caatgagctc tccatggctg gaaaccgtct tgcatctttg ccagttgact taggtcgctc
      781 tcgagaactg cagtatgtgt atgtggataa caacgtcaac ctgaaaggcc tgccctcata
      841 cctctacaac aaagtcatcg gctgcaacgg ctgtggcatc cccatccagt tgtcagaggt
      901 gagactgctg accttctcat ctggggagct gaccgtgttc ctcccagcag aggtgaaggc
      961 aataggcaca gagaaggatc acgtcctacc gctgcaagag ctgaccatgc gcagtctcca
     1021 ccgcacctac catgggcttt ggaaagatct gaactttttg tctccaatct cattacccaa
     1081 aagtctcctg gagctgctgc actgccccct ggggcactgt caccggtgta gtgagcccat
     1141 gtttaccttt gtctacccta agctcttccc cttgagagag acgccaatgg caggcctgca
     1201 ccagaggagg acaagtattg gcttcgtggc ctactgctgc tccgcccagt gtctgcggac
     1261 ttttaacctg ctgtgttgac aaacactcgg agccttagga gcactgccag ctcagccact
     1321 gcagctgcct gccatcgccc agtgtgcggc cgccgggcca ggagagtcca gcaaggcagg
     1381 acagaccctt cctgtcctgt ccagaggaga ggcatgctga actctctgga aatgtcttga
     1441 ttggccttca cctttccctc aagttggaat atatcctgcc ccaaattaag gacgttttgt
     1501 cttctgtgtc tttcttttta tgtgagagtg tctcatatat aaacttagcc agatgagctt
     1561 ccccccatct aatttaaagc aagctgcagt tccctaaaga actcttaatc tgataataga
     1621 accaaattaa ctgttggatg acataccttt ggtgatgatc ctctgccttt ccccagagga
     1681 tgattttccc ttgagattat tctctgtagc ttccgcattg gaaacttgtc agcttctaga
     1741 gtctctgcag cccctatggc ctcagcagcc agcacagcag gagagggagc cggggctggc
     1801 acagtcaggc tcctgcagag ggacagctgg ctccagagca caccctctgg aaagttcctg
     1861 tcttatttct aagttttgca acctatgaag acattttttg agagagattt aaaaacaaaa
     1921 atgtaattaa atatactttt gttctaaact actactacag aaaaagacat tttgaaatgt
     1981 ctgagatttt cttagcaaaa ttggaaacgt tgaggcttct aatcctctgc ttagtggggc
     2041 ttagtggtat ttacctggta ccaccaatga aattgccttc attttctcag acttctccct
     2101 agggaaacaa ggaatgaacg ggtccacatg agtttccttt gccagagaga tgagctctct
     2161 gggggacatc tgatttgctc tcctttgaag ggatgctgct gtaatctgct ttactttcag
     2221 gagtccgtta gcttgctgtg gagtgagtgc tgcttttggg ggtgaaagtt ctatgtttac
     2281 tgctatgatt tatgtaagac aagactgaaa ggagaatcaa gaagggttac taggtggaaa
     2341 aactattttc caaaactttg gttggtgaca ttttgttagc cagcctaact gtaattctag
     2401 gttctaaccg tgccaaaaat cctacatagt tactgacaag tgtgtgatct ctttgcagtc
     2461 acaccacctg ctgcccgaaa agcagtctct ccaagtaatg gcagaggcag aaagcggcca
     2521 tgcatgccat ggttgccact gtccctactt cttcctgtcc ctttcacaac ttctctgttc
     2581 agccttaata tttcaaaggc ctacagtata ataggaactg agcatctgga tcaaacgtac
     2641 ctcttctgtc atccttcgga ataatggaag tttcagcaca accctacatg tacataagct
     2701 ggaagcagga aaatgtgacc tgacacttca catatgtgtt tgacttaaag gaacgtcagt
     2761 gaaatacagg gctgcgtctt tgtttcaccc tcgaccatct tatgtcttaa gtggagctgt
     2821 gaaatgtcac cctgatactc aggaattctc aatgagaggt gtgggatact tttgttctaa
     2881 cttgtttaaa ttcttaataa agtgtttaca ctcc
//
