LOCUS       NM_001143756            1772 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 27 (Lrrc27),
            transcript variant 1, mRNA.
ACCESSION   NM_001143756
VERSION     NM_001143756.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1772)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1 and BC158629.1.
            
            On Jan 19, 2018 this sequence version replaced NM_001143756.1.
            
            Transcript Variant: This variant (1) represents the longer
            transcript and encodes the longer isoform (a).
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158629.1, SRR26360181.1577282.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-4                 JAXUCZ010000001.1  203436102-203436105
            5-1762              BC158629.1         1-1758
            1763-1772           JAXUCZ010000001.1  203464674-203464683
FEATURES             Location/Qualifiers
     source          1..1772
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q41"
     gene            1..1772
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /note="leucine rich repeat containing 27"
                     /db_xref="GeneID:499281"
                     /db_xref="RGD:1559981"
     exon            1..261
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     CDS             49..1590
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /note="isoform a is encoded by transcript variant 1;
                     leucine-rich repeat-containing protein 27"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 27
                     isoform a"
                     /protein_id="NP_001137228.1"
                     /db_xref="GeneID:499281"
                     /db_xref="RGD:1559981"
                     /translation="MEDTSPQAVAEKAAKDPKDAAATAKSLPDSFSRDNDQVDFEGVI
                     YSSSPILDLSQKGLRHLGKFFKIPNLQQLHLQRNLLSEIPQDFFQLLPNLTWLDLRYN
                     KIRVLPPGIGSHKHLKTLLLERNPIKALPVELGQVTTLTALNLRHCPLEFPPYLIVQK
                     GLVSILTFLRICSVENAFPGDESLPGVPTAKSDLLLPLPHKDLSSENGLNVLDQEAAV
                     VKEKGDFFPPMDRLDLSELRKSSSSSEIWPSKEEIRRFWKLRQEIVENEQVEVQENKL
                     LAVELPPNLKAAINAKERKCRKPWPTLRKRSTSFRGILPNLSSTYQNTVHTKRMDDTH
                     KMAFQELQEKERMLEQQRRDKRALQDWREQTQLMRHRREFSKFQPLHRNTMASKIPFA
                     TDLTDYEKMPASPFGKVKPRREGIAQKRIEISTSPLAELEDKIRRHTQQIRARSFLGT
                     NPTQDIKTANQDLETTKKLQEELRRLKLEMTLNKDHSFPPFTGNLSLHPPASRPQNIF
                     FNTKY"
     exon            262..392
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            393..451
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            452..604
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            605..959
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            960..1106
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            1107..1200
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1319
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            1320..1443
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
     exon            1444..1772
                     /gene="Lrrc27"
                     /gene_synonym="RGD1559981"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgactccat accaagaagg atgagcagtg gccactggaa ggcatcaaat ggaggacacc
       61 agcccacaag cagtggccga gaaggctgct aaagatccca aggatgctgc tgccaccgcc
      121 aagagcctcc ctgattcctt ttccagagac aatgatcaag tggattttga aggggtcatc
      181 tattcttcct caccaatttt agacctgagt caaaaaggcc tgcgccattt gggaaagttc
      241 tttaaaattc ccaaccttca acaattacac ctgcagagga atttgctcag cgagattcca
      301 caggatttct tccagctgct gcccaacctg acatggctgg acctccgtta caacaagatc
      361 agggttcttc cacctgggat tggctctcac aaacatttga aaactttgct tttagaaaga
      421 aatcctatca aagcgttacc tgttgagcta gggcaggtca ctacattgac ggcactgaac
      481 ctgagacatt gccctctgga attccctcct tacctgattg tgcagaaagg cttggtatcc
      541 atcctcacct tcctccgcat ctgctcagtg gagaatgcct tccctggaga tgagtcgctt
      601 ccaggagtcc caacagctaa gagcgacctt ctgctccctc tgccccataa agacttgtcc
      661 agtgagaacg ggcttaatgt cctggaccag gaggcagcag tggtgaagga gaaaggtgac
      721 ttcttcccac ctatggacag gctggacctg agtgagctcc gcaaatccag ttcctcctct
      781 gagatctggc ccagtaagga ggagatcagg cgcttctgga agctgaggca ggagattgtg
      841 gaaaatgagc aggtggaggt ccaagagaac aagctcttgg ctgttgagct gccaccaaat
      901 ctcaaggcag caataaatgc caaggaaaga aagtgcagga agccatggcc cacactcaga
      961 aagaggtcta cctccttcag aggcatcttg cccaacctct cttcaacata ccaaaacaca
     1021 gttcatacga agaggatgga tgacactcac aagatggcgt ttcaggagct ccaggagaag
     1081 gagagaatgc tagagcagca gagaagagac aagagagctc tgcaggactg gagagagcag
     1141 acccagctga tgaggcacag gagggagttc agtaaattcc aacctctaca taggaatacg
     1201 atggcatcga agattccctt tgccacagat ctgacagact atgagaaaat gccagcgagt
     1261 ccatttggga aagtaaagcc cagaagagag gggatagcac aaaagcgtat agaaataagc
     1321 acctcaccat tggcagagct ggaggacaag ataaggcggc acacacagca gatccgtgct
     1381 cgcagtttcc tgggtaccaa cccaacgcaa gacattaaga cggccaacca ggacctggaa
     1441 accactaaga aacttcagga ggagttaagg agactgaaac tggagatgac cttgaacaaa
     1501 gaccattctt ttcccccttt cactggaaac ctttcacttc acccaccagc atcacggcct
     1561 cagaatatat tttttaacac aaaatactag gaaagtggtg ttgtcagcag ggatgacaag
     1621 tacctcccac agcggtgtgg ggactggctg ggacagcgac tagtgggtct tcagctgctc
     1681 cacaggctgc ggcttttaat agacttgact cctttctgag gctatacaag gtttagctgc
     1741 attaaaagga agaatcctgt aagcaagcca aa
//
