LOCUS       NM_001394347            1517 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus leucine rich repeat containing 23 (Lrrc23), mRNA.
ACCESSION   NM_001394347 XM_003750656
VERSION     NM_001394347.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1517)
  AUTHORS   Stauber,M., Weidemann,M., Dittrich-Breiholz,O., Lobschat,K.,
            Alten,L., Mai,M., Beckers,A., Kracht,M. and Gossler,A.
  TITLE     Identification of FOXJ1 effectors during ciliogenesis in the foetal
            respiratory epithelium and embryonic left-right organiser of the
            mouse
  JOURNAL   Dev Biol 423 (2), 170-188 (2017)
   PUBMED   27914912
REFERENCE   2  (bases 1 to 1517)
  AUTHORS   Yardimoglu,M., Ilbay,G., Dalcik,C., Dalcik,H., Sahin,D. and Ates,N.
  TITLE     Immunocytochemistry of neuron specific enolase (NSE) in the rat
            brain after single and repeated epileptic seizures
  JOURNAL   Int J Neurosci 118 (7), 981-993 (2008)
   PUBMED   18569155
  REMARK    GeneRIF: The results suggest that NSE immunoreactivity may be a
            valuable marker for determination of the number of metabolically
            active neurons in different brain regions after single and repeated
            experimental seizures.
REFERENCE   3  (bases 1 to 1517)
  AUTHORS   Sakimura,K., Kushiya,E., Takahashi,Y. and Suzuki,Y.
  TITLE     The structure and expression of neuron-specific enolase gene
  JOURNAL   Gene 60 (1), 103-113 (1987)
   PUBMED   2450052
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 15, 2021 this sequence version replaced XM_003750656.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.1548377.1,
                                           SRR26360181.3045686.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760433,
                                           SAMEA5760434 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                JAXUCZ010000004.1  159277670-159277764 c
            96-274              JAXUCZ010000004.1  159277003-159277181 c
            275-384             JAXUCZ010000004.1  159276811-159276920 c
            385-638             JAXUCZ010000004.1  159275860-159276113 c
            639-769             JAXUCZ010000004.1  159273813-159273943 c
            770-906             JAXUCZ010000004.1  159270767-159270903 c
            907-1210            JAXUCZ010000004.1  159268320-159268623 c
            1211-1517           JAXUCZ010000004.1  159267574-159267880 c
FEATURES             Location/Qualifiers
     source          1..1517
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..1517
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /note="leucine rich repeat containing 23"
                     /db_xref="GeneID:312707"
                     /db_xref="RGD:1304779"
     exon            1..95
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
     exon            96..274
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
     CDS             143..1180
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /note="neuron-specific enolase; leucine rich protein, B7;
                     leucine-rich repeat-containing protein 23-like"
                     /codon_start=1
                     /product="leucine-rich repeat-containing protein 23"
                     /protein_id="NP_001381276.1"
                     /db_xref="GeneID:312707"
                     /db_xref="RGD:1304779"
                     /translation="MSDEDDVEDDFDQEPDEVEKEEDDNEMEDWEDDYRKEGEEVSEE
                     WLPTPLTEAMMKEGLSLLCKIGSGLAHAYIKLEVKDRDLTDISLLRSYIHLRYVDISE
                     NHITDMSPLNSLTHLLWLKADGNQLRSARLNELPYLQIASFSYNQITDTEGIIHPRLG
                     SLDLKGNRIHQVTGLDPERLTNLHTLELRANQLETTIGINLPKLKNLYLAQNLLKKVE
                     GLENLSNLTTLHLRDNQIETLDGFSKEMKSLQYLNLRSNMISDLGELAKLRDLPKLRA
                     LVLLDNPCADETDYRQEALVQMAHLERLDKEYYEDEDRAEAEEIRQRLKEEQEQELDP
                     DQDMEPYLPPT"
     exon            275..384
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
     exon            385..638
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
     exon            639..769
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
     exon            770..906
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
     exon            907..1210
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
     exon            1211..1517
                     /gene="Lrrc23"
                     /gene_synonym="Lrpb7"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctcctgctac cccgttgcgt cttccgaaaa aaacagtcct ggcctctcag cacaaagatc
       61 ttcttcataa ctacttctag aggagcagag tcagggacca ggactgagtt tcgtctgact
      121 ccggagcgca ggggagagaa agatgtcgga tgaagatgat gtggaagatg actttgatca
      181 ggagccggat gaagtggaaa aagaagagga tgacaatgag atggaggact gggaagacga
      241 ctacaggaag gagggggaag aagtctctga ggaatggctg cccacccccc tcacggaggc
      301 catgatgaag gaagggcttt cattactctg caagattggc agtggactgg ctcacgctta
      361 tattaagctg gaggttaagg acagggacct cacagacatc tccttactgc gctcctacat
      421 ccacctccgc tacgtggata tttctgagaa ccatatcaca gacatgtcac cactcaacag
      481 tctcactcac ctactgtggc tcaaggcaga cggcaatcag ctccggagcg cccggctgaa
      541 cgaactgccc tacctgcaga tcgccagttt ctcctacaac cagatcacag acaccgaagg
      601 catcatccat ccccgtctgg gaagcctgga tctcaaaggg aaccgcatcc accaggtgac
      661 tggtctggac cccgaaagac tgactaacct gcacaccctg gagcttcgag cgaaccagct
      721 ggaaaccaca ataggaatca accttcccaa gctaaagaat ctctacctgg ctcaaaacct
      781 gctgaagaag gtggaaggcc tggaaaactt gagcaacctg accactctgc atctgcgaga
      841 caaccagatt gaaactctgg acggcttctc caaggaaatg aagtctctgc agtacctcaa
      901 cttgaggagt aacatgatca gtgacctggg ggagctggcc aaactgcggg acctgcccaa
      961 gctgagggcc ttggtgctgc tggacaaccc ctgtgccgat gagactgact accgccagga
     1021 ggccctggtg cagatggcac acctagagcg cctagacaaa gagtactatg aggacgagga
     1081 ccgggcagaa gctgaggaga tccgacagag gctgaaggag gaacaggagc aagaactcga
     1141 cccggaccaa gacatggaac cgtacctccc gccaacttag tggcacctct agcctgcagg
     1201 gacagtaaag gaggccaaag atgctgacct caagaactca taatacccca gtggggacca
     1261 ccgcattcat agccctgtta caagaagtgg gagatgttcc tttttgtccc agactggaaa
     1321 tccgttacat cccgaggctc aggttctgtg gtggtcatct ctgtgtggct tgttctgtgg
     1381 gcctacctaa agtcctaagc acagctctca agcagatccg aggcgactaa gatgctagta
     1441 ggggttgtct ggagagaaga gccgaggagg tgggctgtga tggatcagtt cagctttcaa
     1501 ataaaaaggc gttttta
//
