LOCUS       NM_001395560            2928 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus LDL receptor related protein 10 (Lrp10), mRNA.
ACCESSION   NM_001395560 XM_017599683
VERSION     NM_001395560.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2928)
  AUTHORS   Lu,C.C., Appler,J.M., Houseman,E.A. and Goodrich,L.V.
  TITLE     Developmental profiling of spiral ganglion neurons reveals insights
            into auditory circuit assembly
  JOURNAL   J Neurosci 31 (30), 10903-10918 (2011)
   PUBMED   21795542
REFERENCE   2  (bases 1 to 2928)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
REFERENCE   3  (bases 1 to 2928)
  AUTHORS   Sugiyama,T., Kumagai,H., Morikawa,Y., Wada,Y., Sugiyama,A.,
            Yasuda,K., Yokoi,N., Tamura,S., Kojima,T., Nosaka,T., Senba,E.,
            Kimura,S., Kadowaki,T., Kodama,T. and Kitamura,T.
  TITLE     A novel low-density lipoprotein receptor-related protein mediating
            cellular uptake of apolipoprotein E-enriched beta-VLDL in vitro
  JOURNAL   Biochemistry 39 (51), 15817-15825 (2000)
   PUBMED   11123907
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Jul 19, 2021 this sequence version replaced XM_017599683.2.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.56965.1,
                                           SRR26643294.51830.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-449               JAXUCZ010000015.1  31891358-31891806
            450-494             JAXUCZ010000015.1  31892099-31892143
            495-630             JAXUCZ010000015.1  31892948-31893083
            631-821             JAXUCZ010000015.1  31894786-31894976
            822-1833            JAXUCZ010000015.1  31895092-31896103
            1834-1963           JAXUCZ010000015.1  31896345-31896474
            1964-2928           JAXUCZ010000015.1  31896566-31897530
FEATURES             Location/Qualifiers
     source          1..2928
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p13"
     gene            1..2928
                     /gene="Lrp10"
                     /note="LDL receptor related protein 10"
                     /db_xref="GeneID:305880"
                     /db_xref="RGD:1310471"
     exon            1..449
                     /gene="Lrp10"
                     /inference="alignment:Splign:2.1.0"
     CDS             410..2548
                     /gene="Lrp10"
                     /note="low-density lipoprotein receptor-related protein
                     10"
                     /codon_start=1
                     /product="low-density lipoprotein receptor-related protein
                     10 precursor"
                     /protein_id="NP_001382489.1"
                     /db_xref="GeneID:305880"
                     /db_xref="RGD:1310471"
                     /translation="MLSALPFLLLLLLGGALARPDRIPFLNSACEAPPAVLLEVQGTL
                     QRPLGRDSRSSPANCTWVILGSKEQTVTVRFQKLHLACGSEHLILHSPLQPPVSLCEA
                     PAGPLQLPGGNVTITYSYAGARAPMGQGFLLTYSQDWLLCLQEEFQCLNHRCIPAAQR
                     CDGIDACGDGSDEAGCRSDPFPNPVPAPTPPCNLTLEDFYGVFSSPGYSHLASVSHPQ
                     SCLWLLDPHDGRRLAVRFTALDLSYGDAVHVYDGAGPPETPRLLRSLTHFSNGKAVTV
                     ETLSGQAVVSYHTVAWSNGRGFNATYHVRGYCLPWDRPCGLGSGLGASENLGERCYSE
                     AQRCDGSWDCADGTDEEGCPGCPPGHYPCGAAGTPGATACYLPADRCNYQTFCADGAD
                     ERRCRHCQPGNFRCRDEKCVYETWVCDGQPDCTDGSDEWDCSYALPRKVITAAVIGSL
                     VCGLLLVIALGCTCKLYAIRTQEYSIFAPLSRMEAEIVQQQAPPSYGQLIAQGAIPPV
                     EDFPTENPNDNSVLGNLRSLLQILRQDMTPGGTSGGRRRQRGRSVRRLVRRLRRWGLL
                     PRTNTPARAPETRSQATPSVPSEALDDSTGQACEGGAVGGQDGEQAPPLPIKSPIPTP
                     STLPALATASEPPGPLPSVPVESSLLSGVVQVLRGRLLPSLWPPGPTWTPTGTHTAVL
                     PLEDEDDVLLMPLAEPEVWVVEAEDEPLLA"
     exon            450..494
                     /gene="Lrp10"
                     /inference="alignment:Splign:2.1.0"
     exon            495..630
                     /gene="Lrp10"
                     /inference="alignment:Splign:2.1.0"
     exon            631..821
                     /gene="Lrp10"
                     /inference="alignment:Splign:2.1.0"
     exon            822..1833
                     /gene="Lrp10"
                     /inference="alignment:Splign:2.1.0"
     exon            1834..1963
                     /gene="Lrp10"
                     /inference="alignment:Splign:2.1.0"
     exon            1964..2928
                     /gene="Lrp10"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgccggct gctgggcttc ggccggggtc cgccgggcac cgcgagctgc tcaaagccgc
       61 cgtcccgctc ccctgagggt cgcggggacc gggccgcgcg ccggctccgg gacggacagt
      121 ccacaaagtt tggtccgcgg aggacgcagc gtccagcccg gcaggtgcgg ccgggcctgg
      181 ccggggcgct cgcggccttg cgagcgagca ccgccgggca ccggtaagga gcgatcaact
      241 ctgaagttgg caagaggcgt cacccctgtt cctctccgcc gcgcgtccag ccctggcacc
      301 ccgagcctgg gtcgttccgg ggctatgcag ccccgacccg gcgcggagct tcctgccagg
      361 tagtcgagcg gcgccccggg accctgccgg cacccctgtt cgacccagga tgctatcggc
      421 cctccccttt cttctcctcc tcctcctcgg aggtgctctg gcccgcccag accggatccc
      481 tttcctaaat tctgcttgtg aggcaccccc agcagtactc ttggaagtac aaggcacttt
      541 acagaggcct ctgggccggg acagccgaag ctcccctgcc aactgcacct gggttattct
      601 gggcagcaag gaacagacgg taactgtcag gttccagaag ctgcacctgg cctgtggttc
      661 agagcattta atcctgcact cccctctaca gccaccagtc tccctgtgtg aggcccctgc
      721 cggccctttg cagctaccag ggggcaatgt caccattaca tacagctatg ctggggccag
      781 agcgcccatg ggccagggct tcctgctgac ttacagtcaa gactggctgc tgtgcctgca
      841 agaagagttc cagtgcctaa accaccgctg cataccagcc gctcagcgct gtgacgggat
      901 cgacgcctgt ggtgatggct ctgatgaggc aggctgccgc tcagatccat tccctaaccc
      961 ggtccctgcg ccaaccccgc cctgcaatct caccttggag gacttttatg gggtcttttc
     1021 ttcccctgga tattcacatc tggcctcagt ctcccacccc cagtcctgcc tgtggctgct
     1081 ggacccccac gatggccgga ggctggcagt gcgcttcaca gccctggact tgagttatgg
     1141 agatgccgtg catgtgtatg acggcgccgg gccccctgag acccctcgac tgctgcgtag
     1201 tctcacccac ttcagcaatg gcaaggctgt cactgtggag accctgtccg gtcaggctgt
     1261 tgtgtcttac cacacagttg cttggagcaa tggccggggc tttaatgcta cctaccatgt
     1321 ccggggctac tgtttacctt gggacagacc ctgcggcttg ggctcgggcc tgggggctag
     1381 tgaaaacctc ggtgagcgtt gctatagtga ggcacagcgc tgcgatggct catgggactg
     1441 tgctgatggc acagacgagg agggttgccc tggctgccca ccagggcact atccctgcgg
     1501 agctgccggc acccctggcg ccacggcctg ctacctgcct gccgaccgct gcaactacca
     1561 gacgttctgc gctgacggag ccgacgagag gcgctgtcgg cattgccagc ctggcaactt
     1621 ccggtgccgg gatgagaagt gtgtgtatga gacgtgggtg tgtgacgggc agccggactg
     1681 cactgacggc agtgacgagt gggactgctc ctacgccctg ccccgaaaag tgatcacagc
     1741 agcggtcatc ggcagcctgg tgtgtggcct gctgctggtc atcgctctcg gctgcacctg
     1801 caagctctat gccattcgca cccaggagta cagcatcttt gcccccctct cccggatgga
     1861 ggctgagatt gtacagcaac aggcaccccc ttcctatgga cagcttattg cccagggtgc
     1921 tatcccacct gtagaagact tccccacgga gaaccccaat gacaactctg tgctggggaa
     1981 cctacgttct ctgcttcaga tcttgcgcca ggatatgact ccaggaggta cttccggggg
     2041 ccggcgtcgc cagcgtggcc gctcagttcg tcggctggtt cgcaggctcc gtcgttgggg
     2101 cctgcttcct cgaacaaata ctccggctcg ggctcctgag accagatccc aggccacacc
     2161 ttctgttccc tctgaggccc tggacgacag cacaggtcaa gcctgtgagg gtggggcagt
     2221 aggagggcag gatggggagc aggctcctcc actacccatc aagtccccca taccaacccc
     2281 aagcacactt ccagcccttg ctactgcctc tgaacctcca gggccactac cctcagtgcc
     2341 tgtagaatca tcactgttgt ctggagttgt ccaggtccta cgaggccgcc tcctacccag
     2401 cctgtggccc ccaggcccca cttggacccc aactggaact cacacagcag tcctgcctct
     2461 agaggatgag gatgatgtat tgttgatgcc attggctgag ccagaagtct gggtggttga
     2521 ggcagaggat gaaccactgc ttgcctgaga gactctagac acaatgtatg atctgtggaa
     2581 gtggttcaga aagttagtgt ccctcgagca gggagagcgc tcactgtgtg caccttctgt
     2641 atctggtaag agacttcgcc accaccctct gcccagcctg ctgtccaggt ggctgtgtta
     2701 agaaaggtcc caaaaggatc acaggcttgg acactccatt ctttccaact ccccacctaa
     2761 aagtggcctt aacttcttac tagactgatt ggctggagac ctagccccca aggggaggat
     2821 ttggccaggg tgatgcctgg cccacttaga ggacacaagt gcttttgccc cttagctgca
     2881 ttgtccagga aatcaagacg acaaaaataa aggaatcata aacttcaa
//
