LOCUS       XM_006232007            5724 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich repeat, Ig-like and
            transmembrane domains 3 (Lrit3), mRNA.
ACCESSION   XM_006232007
VERSION     XM_006232007.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051337.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006232007.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006232007.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5724
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5724
                     /gene="Lrit3"
                     /note="leucine-rich repeat, Ig-like and transmembrane
                     domains 3; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 2 Proteins, and 98% coverage of
                     the annotated genomic feature by RNAseq alignments"
                     /db_xref="GeneID:502596"
                     /db_xref="RGD:1559637"
     CDS             3012..5120
                     /gene="Lrit3"
                     /codon_start=1
                     /product="leucine-rich repeat, immunoglobulin-like domain
                     and transmembrane domain-containing protein 3"
                     /protein_id="XP_006232069.1"
                     /db_xref="GeneID:502596"
                     /db_xref="RGD:1559637"
                     /translation="MWLFACLCLVLSFLGGVNCTCPSQCSCEYHGRHEGSGSRSVLCN
                     DLDMNEVPTNLPVDTAKLRIEKTVVRRIPAEAFYYLVELQYLWLTYNSVASIETRSFY
                     NLKQLHELRLDGNSLTEFPWASLLDMPHLRTLDLHNNRITSVTNEAVRYLRNLTCLDL
                     SSNRLTTLPPDFLDSWSHLAMTPSRSPDLPPKRIILGLQDNPWFCDCHISKVIELSKV
                     ADHAAVLLDPLMVCSEPEYLQGIAFQRVELEKCLKPSVMMSATKITSALGSNVLLRCD
                     AKGYPTPQLMWTRSDSSPVNATVIQESPGEGVRWSILSLTGITYRDAGDYSCKAKNLA
                     GTSEAVVTVTVVGVATTTLSPDTSERSPGEHPEQNHPQPGLGRSTPQSKSWLWPGLSY
                     TSSHPTSSAAALSTSTLSPPPSSLPPIFSAASATTSVRTSISGSTVRTSHRPPLLHPG
                     GKSNAKIEKNGRKFPPLSASKKEELALMDQAAPMETNITIKDLRVARETGASVTLTWS
                     SSSSSSSSSSSSSSSSSSSSSSSSIQESAVTVLYSKYGEKDLLLVDADYGKNQATING
                     LEPGSQYVACVCPKGVGPREDQCITFSTDRVEGRDSQWSLLIVVTSSACVIVVPLICF
                     LLYKVCKLQCTSDPFWEDDLSKETYIQFETLSPRSQSIGELWTRRHKDDGEKLLLCSR
                     SSVDSQMNLKSDGHRAEYYC"
ORIGIN      
        1 gtggctgcaa atctttctga ccaaactttc aggagcctgc ggtggcaaaa gcaactgaag
       61 ggaggcaggg tttattttgg ttcacagttg gagggaattg aattcagcat ggcagctggt
      121 cacacagtat ctacagacag gaagcagaat gacatcaatt ctggagttca ctcgctctcc
      181 cctttcagcc caagacctca cgtagtaccc acactcagga tgcttctttc cactccagtt
      241 accccaatct agacagttgc tcacagacat caccatagat ttattctcca ggtgattctg
      301 tgtcctgtga agtttaccgc catgcccgtg aaggaagtct ggctgtctca gccgcaaagt
      361 tcaaggcctc ctcaccaaag cccagagaga gttttcagtg ttctgtaatc ctccagtggc
      421 aacattaaaa tgtgttcctg gagagctctg ggggttttgt gccaggagcc cttggctcat
      481 tcagccccca cagttaagct gcttacagag acaagggtct ctgcttagtc acagaacagt
      541 tagatggcgt gagacagtat ctaccatatt acccagagaa ttgattacgg gttctagctt
      601 tgagttcatt tctaacgaca aacaagggat aatttcactt taacgtgaag gacttcattg
      661 tcgcactaat atttaacacc atgtcaatca actaatctat acagtgagac cgactcagct
      721 tcgaatctgg ctccctatag ctcctgggct tcctagcttg gaggcttatc tctatatcgc
      781 tttgttcttc tcagctggtc acatccttct cctctaggtc agagcatcca taaacctgac
      841 aacgcacaga ccttttggtc actgagtgcg cagagttttg ccaccagcct attttccctc
      901 tcttgagctc aatagctcag agctaccaac ctttaaaagc cagagcttgc acccatcact
      961 gcacccccag cagggaaacc ctggggttgt tcttaaatcc agtcttcatc ccacctacac
     1021 ccaatcaacc ctctgtttcc cgaaacctta tccacactcc tgtcagcaca ctggggttga
     1081 cggtggcggc ttgctgggac cataaccacc ggtgcccacc tagagccacc agctgccttc
     1141 ctgccggctc taaacccctt tgtcaacaca gctaccaaga aatcccacta atctgttgat
     1201 ctgatgagcc actcacggct taacctttct gtttttgctg cctggaagct gaactcgggc
     1261 tctttagccg ggcatctgag gcccttcctc agcctcggcc acttagtcct gagcaacaga
     1321 aagcgcttgt gtctttctga ggttctcttg aagcttcaca cacacacaca cacacacaca
     1381 cacacactgc actctttcct gtttccctct gcttgctcag gagggagctc aggtgccacc
     1441 caacaagaca gctttgcctg actgcactgg ctgaacatgg tgttctcttg tgctcactgc
     1501 aaccatgtgt ggcttatctt tgtacctcta gtcctcggtt ccgaggttgg caagttctcg
     1561 gtaaatattt ggtgaaccat cgaattatgt agtctccgaa cagctgtgat acggtgtttt
     1621 taaattcagc aatgttttcc agactccagt tagataataa attctattgg agtttgataa
     1681 cgtgtcttgt aatactctta tttttacaga actggttctc ttttctcaag gttttatggt
     1741 tgagtatgat aggcagaatc acagtctatg aggattagat aaagcctttc catcatcctc
     1801 atggattatt cagtgtgtgt gtttgtgtgt gtatttgtgt gtgtgtgtgt gtgtgtgtgt
     1861 gtgtgtgtgt gtgtgtgtgt gtgtaggtag gtaggtaagt aggtagtttc ttaggttaaa
     1921 attgtattct ctgcagctgg gtggagtggt gtgtgctttt cggacaggca ggtctctttg
     1981 agttcaaacc cagcctggtc tacatactga gataatgtct caaaaattat ttttgctaaa
     2041 tgctactaaa ggactaaaag caattgactg tctgagatcc tcctgtgcaa tccaacatgg
     2101 tattgactga ggatgacttt gaacatctga tcctcctgcc tttacatttc aaatgctgag
     2161 tttacgggca cgtgccacaa aacgcagttt tatgtggtac tggagatagg acccaggctt
     2221 tgtccattcc aggcaggcac acttctgact gagctgcaac cctagccctc agtccatcct
     2281 taaataggat tttgatgccc cagactcaga attaaatata gctttgaaca gaggccatta
     2341 ccttcattag aaatgaacac tcttgggcac atcttatgca tacctcaagg atctgggaga
     2401 gactcgggac ttgttctcac tggagctgta gctctgacac atcaggagtg ggttgaaggg
     2461 tcttatggca acagtatata tgtctagctt acttggtatt ggggagatga gcaatctggg
     2521 caagactggt aactatattt gaagtaaatt tgaattaaag tcacatttgc tggtgaagat
     2581 gcaaaaagaa aaaggggacc atgtctgtat aaagaaacta ctgaaaaatc ttagcatagg
     2641 ccaagatact gatactttgt aacaccggtt ctgtttttaa gccacagaag ctccaggaaa
     2701 gtttttaagt tccatctata ggaaaggtgc ctgaggtggg tttccttgca aatctagacg
     2761 tgggagacta ttgaattgac ctgatggttt gattttcact tcccttagca agtgtgttac
     2821 ttggctgagc ccacgttcaa aggctgggcg gattgatccc ctgcaagaca cttgaaggtt
     2881 aagtaacttc agatctcagc taatcccact aagctgctga tactaaatgt cggccggcat
     2941 tcccggtgca acagcttctg catgctcttg gtttggacct taccttttgt tcagagagcc
     3001 accttggagc tatgtggctc tttgcctgcc tgtgccttgt gcttagcttc ctgggaggag
     3061 tgaattgtac ctgcccttct cagtgctcct gtgaatatca cggcagacac gaaggctcag
     3121 gatcaaggtc ggtgttgtgt aacgacctgg atatgaatga agtcccaaca aaccttcccg
     3181 tggacaccgc gaagctccgt atagagaaga ccgtggtccg caggatcccc gccgaggctt
     3241 tctactacct ggtggagctg cagtacctct ggctgactta caactcggtg gccagcatag
     3301 agaccaggag cttctacaac ctaaagcagc tgcacgagtt gcgtttggat gggaattctc
     3361 tgaccgagtt cccgtgggcg tctctgctgg acatgcccca cctgaggacg ctggacttgc
     3421 acaataacag aataacaagt gtgacaaatg aggcggtcag atatctcagg aaccttacct
     3481 gcttggattt gtcaagcaac agactaacca cactgccacc tgatttcctg gacagctggt
     3541 ctcatttagc gatgacacct tctagaagcc cggaccttcc accgaaaaga attattcttg
     3601 gtttacagga caacccttgg ttctgtgact gtcacatttc caaagtgatc gagctgtcta
     3661 aagtcgccga ccacgctgct gtgcttcttg atcccctgat ggtctgcagc gaaccggagt
     3721 acctccaagg aatcgcgttt cagagggtgg agttggaaaa gtgtctgaag ccatccgtga
     3781 tgatgtcggc caccaaaatc acatctgctc tggggagtaa tgttctgctg aggtgtgacg
     3841 ccaaaggcta ccccacccca cagctgatgt ggacccgatc ggacagctcg ccagttaacg
     3901 ctacagtaat tcaggagtct ccaggagaag gagtcagatg gtccatctta agcttgactg
     3961 gtatcacgta cagggacgct ggggattaca gctgtaaagc caaaaatctg gcagggacgt
     4021 cagaggctgt ggttactgtg acagttgtcg gtgttgctac gaccacccta tcaccagata
     4081 cttcagaaag aagccctgga gagcaccctg aacagaacca tccccagcct ggattaggaa
     4141 gatcaacccc tcagtctaag tcctggttat ggccaggact ctcttacact tcttcccacc
     4201 ccacttcctc agccgccgct ctctctacat ctacactgtc tcctcccccc tcctctttgc
     4261 ctcccatctt ctcagctgct tctgcaacca ccagtgtaag aaccagcatc tcaggaagca
     4321 ccgtcaggac tagccaccgg ccacccctgc tccaccccgg tgggaaaagc aacgcaaaga
     4381 tagagaagaa cggaaggaag tttcctccac tcagcgcaag taagaaagaa gagttggcgt
     4441 tgatggatca ggcagcgcca atggaaacaa acatcactat caaagacctc agggtggccc
     4501 gcgaaaccgg cgcgagtgtg actctgacct ggagcagtag cagcagcagc agcagcagca
     4561 gcagcagcag cagcagcagc agcagcagca gcagcagcag cagcagcata caggagtctg
     4621 ctgtgactgt gctatattct aagtatggtg agaaggacct gctgctagtg gatgcagact
     4681 acggcaagaa ccaggcgacc ataaacggcc tggagcctgg cagtcagtat gtggcatgtg
     4741 tctgtccaaa aggagtgggg ccccgagagg atcagtgtat caccttctct accgacagag
     4801 tcgaagggcg ggactcacag tggtcattgc tcatcgtggt gaccagctct gcctgtgtta
     4861 tagtcgtgcc cctaatttgt tttttattat ataaagtctg caaactgcag tgcacgtcag
     4921 atcctttctg ggaagatgat ttgtcaaaag agacgtatat ccaatttgag acgctgtcac
     4981 ccaggtcaca gagtattggg gagctctgga cacggaggca caaagatgat ggggaaaagt
     5041 tgctgctatg ctcccggtcc agtgtggact ctcagatgaa tcttaaaagc gatggccata
     5101 gagcggagta ttactgctga ggttcgacag gtgaggtgaa cgtgaacaaa gacttgtggg
     5161 agcgcaggct accgcggatc atctgttggg tgacttttgg acagatttcc gggccatctg
     5221 tgagaatcgc aaatggagta ttttttttat atatttaaaa aaattttagt tgagaaacat
     5281 ctcaactaaa acaacaaatg atcccggttt ttattacagg aagggcgtct gtataaataa
     5341 tttcccagtg gtatttaaga agcttgcaat gattttaact ttagggaaat ccagttcctt
     5401 aaatgaattg acaaggagat atccgagata ggcaaactct gcatttaaga agagagaata
     5461 ttttgaacag cggaagaaca tgagcctagc cagccaagac tgattggccc cgaatgttca
     5521 aagtgctttc gggtttgctg tgggcatttg ccgccattgc ctggtgtgtg actgcgattc
     5581 taatgaagtt tgtatctaga aatagttttt tcccctctca tcatttgcag ttagatatca
     5641 ttcaaattta gtacaaaaaa gatcataaca aacaacattt tctatagaat tagtggtttt
     5701 agactgtatg ggtctcataa tgtg
//
