LOCUS       NM_139331               2289 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus leucine-rich repeat, Ig-like and transmembrane
            domains 1 (Lrit1), mRNA.
ACCESSION   NM_139331
VERSION     NM_139331.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2289)
  AUTHORS   Gomi,F., Imaizumi,K., Yoneda,T., Taniguchi,M., Mori,Y., Miyoshi,K.,
            Hitomi,J., Fujikado,T., Tano,Y. and Tohyama,M.
  TITLE     Molecular cloning of a novel membrane glycoprotein, pal,
            specifically expressed in photoreceptor cells of the retina and
            containing leucine-rich repeat
  JOURNAL   J Neurosci 20 (9), 3206-3213 (2000)
   PUBMED   10777785
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            AB028461.1.
            
            On Oct 20, 2007 this sequence version replaced NM_139331.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB028461.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMN12840114,
                                           SAMN13663631 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-2289              AB028461.1         1-2289
FEATURES             Location/Qualifiers
     source          1..2289
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..2289
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21; Pal"
                     /note="leucine-rich repeat, Ig-like and transmembrane
                     domains 1"
                     /db_xref="GeneID:246214"
                     /db_xref="RGD:628607"
     exon            1..185
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21; Pal"
                     /inference="alignment:Splign:2.1.0"
     CDS             64..1935
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21; Pal"
                     /note="leucine-rich repeat, immunoglobulin-like domain and
                     transmembrane domain-containing protein 1; retina-specific
                     protein PAL; leucine-rich repeat-containing protein 21;
                     photoreceptor-associated LRR superfamily protein; retina
                     specific glycoprotein; putative type I transmembrane
                     protein; leucine rich repeat containing 21; leucine-rich
                     repeat, immunoglobulin-like and transmembrane domains 1"
                     /codon_start=1
                     /product="leucine-rich repeat, immunoglobulin-like domain
                     and transmembrane domain-containing protein 1 precursor"
                     /protein_id="NP_647547.2"
                     /db_xref="GeneID:246214"
                     /db_xref="RGD:628607"
                     /translation="MWVALGMLWLLALGGPHQAWSFCPSQCSCSLHILSDGSKARTVV
                     CSDPDLTLPPASIPPDTCKLRLERTAIRRVPGETFRPLSRLEQLWLPYNALSELSTLM
                     LRGLRRLRELRLPGNHLVTFPWAALKDTPQLQLLDLQANRLSTLPPEAVHFLENLTFL
                     DLSNNQLMRLPEELLDTWAHLKTGPYLSSRRTRLVLGLQDNPWVCDCRLYDLVHLLDG
                     WASNLIFIEARLRCGSPRSLAGVAFSQLELRKCQSPELRPGVTSIISPLGSTVLLRCG
                     ATGIPGPEMSWRRANGRPLNGTVHQEVSSDGSSWTLLDLPVVSLFDSGDYICQAKNFL
                     GASETLISLIVTEPQTSTEYTGIPGALWARTGEGAEAAAYNNKLVARHVPHVPEPVAL
                     ATKPSVPSIKEELPLQNFQMDVPGEFSREPSEHQETQMVRSLKVVGDTYHSVSLVWKA
                     PQAGNTTAFSVLYAVFGQRDMRRMTVEAGKTSVTIEGLAPKTKYVACVCVRGLVPTKE
                     QCVIFSTDEVVDAEGTQRLINMVVISVAAIIALPPTLLVCCGALRRRCHKCRAGGSAE
                     ASGAYVNLERLGHSEDGSEELSRSSLSEADRLLSARSSLDSQVLGVRGGRRINEYFC"
     exon            186..652
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21; Pal"
                     /inference="alignment:Splign:2.1.0"
     exon            653..958
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21; Pal"
                     /inference="alignment:Splign:2.1.0"
     exon            959..2289
                     /gene="Lrit1"
                     /gene_synonym="Lrrc21; Pal"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gacaagcagg gcagagcact cctgggacag gtccctgcct aggcccaaga ggagccagaa
       61 gtcatgtggg tggccctggg catgctctgg ctccttgcac ttgggggacc tcaccaggcc
      121 tggagcttct gtccttctca atgcagctgc agcctgcaca tcctgagtga cggcagcaag
      181 gccaggacag tggtgtgcag cgaccctgac ttgactctgc ccccagcttc gattcctccg
      241 gacacctgca agctgcgcct agagcgaacc gccattcgca gggtgcccgg agagaccttc
      301 aggcctctca gccgcctgga gcagctgtgg ctaccctaca atgctctcag tgagcttagt
      361 accctcatgc tcaggggtct gcgacgtcta cgagagctgc ggctgcctgg gaaccacctg
      421 gtcactttcc cctgggctgc actcaaggac actccacagc tgcaactact ggacctgcag
      481 gccaatcgcc tctcgacctt gccacccgag gctgtacact tcctggaaaa ccttactttc
      541 ctggacctct ccaataacca gctgatgagg cttcctgagg agctactgga tacgtgggct
      601 cacctgaaga ccggacccta tctttccagc cgtcgtacca ggctagtctt agggcttcag
      661 gacaacccct gggtgtgtga ctgtcggctc tatgacttag ttcatctcct agatggctgg
      721 gcttccaact tgatcttcat cgaggctaga ctgaggtgtg gcagcccacg cagcctggct
      781 ggagtggcct tcagccagct ggagctaaga aagtgtcaga gcccagagct ccgtccaggg
      841 gtgaccagca tcatatctcc tttgggtagc acagtgttgc tacgttgtgg agcaactggg
      901 atcccaggac ctgagatgag ctggaggaga gccaatggac gaccactcaa tggcacagtt
      961 caccaggaag tctccagtga tggctcaagt tggactttgc tggatctgcc tgttgtgtct
     1021 ctctttgact ctggggacta catctgccaa gccaagaact ttctgggagc ttctgaaact
     1081 cttatctcct tgattgtcac tgagccacag acttctacag aatatactgg gattccaggg
     1141 gccctatggg caaggacagg ggaaggggca gaagctgctg cttacaacaa caagctagtg
     1201 gccaggcatg ttcctcatgt tcctgagcct gtagccctgg ctaccaagcc ctcagtgccc
     1261 agcataaagg aggagctgcc tctccagaac tttcagatgg atgtcccagg ggagttctcc
     1321 agagagccat cagaacacca ggagacacag atggtcaggt ctctcaaggt ggtaggagat
     1381 acttaccaca gtgtgtcttt ggtgtggaag gcccctcaag ctgggaacac aactgccttt
     1441 agtgtccttt atgcagtctt tgggcagcga gacatgcgaa ggatgactgt ggaggccggg
     1501 aagacgagtg ttactattga ggggcttgcc ccaaagacca agtacgtggc atgtgtctgt
     1561 gtgcggggcc tggtgcctac gaaggaacag tgtgtcatct tctctactga tgaggtggta
     1621 gatgcagagg gcacccagcg actcatcaac atggtggtca tcagtgtggc ggccatcatc
     1681 gcgctgcctc ccactctgct ggtttgctgc ggggctctcc gaagacgctg ccacaagtgc
     1741 cgcgctgggg gctctgcaga ggcatccggg gcctatgtta atttggaaag actaggccac
     1801 agtgaagatg gctcagagga gctgtccagg agcagcctca gtgaagcaga taggcttctc
     1861 tcagcacgtt ccagcctgga ctcccaggtc ttgggtgtca ggggcggcag acgcatcaat
     1921 gagtacttct gctgagtctg agtcgccact aacacctccc tcttcagtct catacactta
     1981 cttttacacc tgactgagtg ctcggccacc ctgactgttt tgtgtacttg gttacttgta
     2041 catttacatc aacaacagtt aacaccgtgt tttaagcact cgttgtgtgc cagccaacat
     2101 ccaaaggact tcataggtat tcactcactt aacttttata atagcaggca tcatttttct
     2161 ctctattttc ctggagaaga aacaggtgtt aagtatttgg cctgtatcag tcagcttctg
     2221 ctgtctaaca aataaaagca aaaactctct ggtatgcagc atttagatat gtatttccac
     2281 actatgtgt
//
