LOCUS       XM_216905               3747 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine-rich repeats and
            immunoglobulin-like domains 3 (Lrig3), mRNA.
ACCESSION   XM_216905
VERSION     XM_216905.10
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051342.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_216905.11.
            
            On Jan 21, 2021 this sequence version replaced XM_216905.9.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3747
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3747
                     /gene="Lrig3"
                     /note="leucine-rich repeats and immunoglobulin-like
                     domains 3; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 ESTs, 1 long SRA read, 17
                     Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 66 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:299830"
                     /db_xref="RGD:1561255"
     CDS             293..3643
                     /gene="Lrig3"
                     /codon_start=1
                     /product="leucine-rich repeats and immunoglobulin-like
                     domains protein 3"
                     /protein_id="XP_216905.5"
                     /db_xref="GeneID:299830"
                     /db_xref="RGD:1561255"
                     /translation="MGAPGLRAAAAALGLLLCAGLGRAGPAGSGGHGAPGQLSDEATR
                     RPCPAACHCLGDLLDCSRRRLIRLPDPLPAWVTRLDLSHNRLSFIQASSLSHLQSLQE
                     VKLNNNELETIPNLGPVSANIRQLSLAGNAIDKILPEQLEAFQSLETLDLSNNNISEL
                     RTAFPPLQLKYLYINSNRVTSMEPGYFDNLGSTLLVLKLNRNRISAIPPKMFKLPQLQ
                     HLELNRNKIKNVDGLTFQGLGALKSLKMQRNGVTKLMDGAFWGLSNMEILQLDHNNLT
                     EITKGWLYGLLMLRELHLSQNAINRISPDAWEFCQKLSELDLTFNHLSRLDDSSFLGL
                     SLLNALHVGNNKVSYIADCAFRGLSSLKTLDLRNNEISWTIEDMNGAFSGLDKLRQLI
                     LQGNRIRSITKKAFAGLDTLEHLDLSGNAIMSLQNNAFSQMKKLQQLHLNTSSLLCDC
                     QLKWLPQWVAENNFQSFVNASCAHPQPLKGRSIFTVSPDGFVCDDFPKPQITVQPETQ
                     SAIKGSDVSFTCSAASSSDSPMTFAWKKDNEALQDAEMENYAHLRAQGGELMEYTTIL
                     RLRNVEFASEGRYQCVISNHFGSSYSVKARLTINMLPSFTKTPMDLTIRAGAMARLEC
                     AAVGHPAPQIAWQKDGGIDFPAARERRMHVMPEDDVFFIVDVKIEDIGVYSCTAQNSA
                     GSVSANATLTVLETPSFLRPLLDRTVTKGETAVLQCIAGGSPPPRLNWTKDDSPLVVT
                     ERHFFAAGNQLLIIVDSDVSDAGKYTCEMSNTLGTERGNVRLSVIPTPTCDSPHMTAP
                     SLDGDGWATVGVVIIAVVCCVVGTSLVWVVIIYHTRRRNEDCSITNTDETNLPADIPS
                     YLSSQGTLADRQDGYISSENGSHHQFVTSSGGGFFLPQHDSAGTCHFDDSSEADVEAA
                     PDPFLCPFVSSSGPVYLKGNLYGPDPFEVYLPGCSSDPRIALMDHCESSYTKKDCFSC
                     AHPSEEPCERSLKSIPWPHSRKLMNSAFSQNEGPAVQTLRLNKSVDFSTSPEPGSATS
                     SNSFMGTFGKPLRRPQLDALSSFAQPPDCQPRPCHGKSLSPPELDSESEEDEKERTDF
                     REENHRCTYQQILHSYRTPDRQPCDSDT"
ORIGIN      
        1 ttccgccgtg cggggacctc gcgcccggcc gccgccgcag gcggaaaagt ttctcagcgt
       61 gcgatcgcgc tttcggacgc cgctcgggct gccttctcac cgtggctgcc gatcctccgc
      121 tgctagctct tccgctgtgc acaggcatga gaggccttcc gtgccgggtc tgagcggcca
      181 ggaacacgag gcggtgatcg gcgtgtccag cccggtctgt gagtcggtgc ttttggaggt
      241 gctcgaggct gcagagctcc cggccgaacc ggaggcggcg gggcgcgcgg cgatgggtgc
      301 tcccgggctc cgagctgcag ctgcggcgct gggactgctg ctctgcgcgg ggctggggcg
      361 cgcgggcccg gcagggagcg gaggccacgg ggcgcccggg cagctctcgg acgaagctac
      421 gcggcgcccg tgcccagccg cctgccactg cctcggggat ctgctggact gcagccgccg
      481 gcggctgatt cgccttcccg atcctctccc ggcctgggtc actcggctgg acctgagtca
      541 caacagatta tcatttatcc aagcgagttc cctgagccac cttcaaagcc ttcaagaagt
      601 gaagctgaac aacaatgaat tagagaccat cccaaacctg ggaccagttt ctgcgaacat
      661 tagacagctg tccttggcag ggaacgccat cgacaaaatc ctccctgagc agctggaagc
      721 atttcagtcc ctggagactt tggacctgag caacaacaac atttcagaac tcagaacagc
      781 atttccaccc ttacaactca agtatctgta tatcaatagc aaccgagtta cgtccatgga
      841 accggggtat tttgacaatt tggggagcac tctcctggtg ctgaagctga acaggaaccg
      901 catctcagcc atccccccca aaatgtttaa attgcctcag ctgcagcacc ttgaactgaa
      961 cagaaacaag attaagaacg tggatggact cacattccag gggcttggcg cattgaagtc
     1021 cctgaaaatg caaagaaatg gagtgactaa gctcatggat ggagcttttt gggggctgag
     1081 caacatggaa atcctgcagc tggaccataa caacctaacc gagattacca aaggctggct
     1141 ctatggcttg ttgatgctac gggagcttca tctgagccag aatgccatca acaggatcag
     1201 cccggacgcc tgggagttct gccagaaact cagtgagcta gacctgactt tcaaccactt
     1261 atccaggcta gacgattcca gcttccttgg cctaagccta ctaaatgccc tccacgttgg
     1321 gaataacaaa gtcagctaca ttgctgattg tgccttccgg gggctttcca gtttaaagac
     1381 tttggatctg aggaacaatg aaatttcatg gaccatcgaa gacatgaatg gagcattctc
     1441 tgggctggac aaattgaggc aactaattct ccagggaaac cggattcgat ctattaccaa
     1501 aaaggccttc gctggtttgg acacattgga acaccttgac ctcagtggca atgccatcat
     1561 gtctctgcaa aacaatgcat tttcccaaat gaagaaactt cagcaactgc atctaaatac
     1621 atcaagcctt ttgtgtgatt gccagctaaa atggcttcca cagtgggtgg cagagaacaa
     1681 ctttcagagc ttcgtgaatg ccagttgcgc ccaccctcag ccgctgaaag ggagaagtat
     1741 ttttactgtc agcccagatg gctttgtgtg tgatgacttt cccaaacccc agatcacggt
     1801 ccagccggaa acacagtcag ccataaaggg ctccgacgtg agttttacct gctcggccgc
     1861 tagcagcagc gactccccta tgacgttcgc ttggaagaaa gacaacgaag cgcttcagga
     1921 cgctgaaatg gagaactatg cgcacctccg ggcccaggga ggcgagctga tggagtacac
     1981 caccatcctg aggctccgca acgtggaatt tgccagcgaa gggaggtacc agtgcgtcat
     2041 ctccaaccac ttcggttcat cgtactccgt caaagccagg ctcaccatca acatgttgcc
     2101 ttcctttacc aagaccccca tggacctcac catccgtgct ggggccatgg cccgcctgga
     2161 gtgtgctgct gtgggacacc cagccccgca gatagcctgg cagaaggatg gaggtataga
     2221 cttcccagct gcccgggaga gacgcatgca cgtgatgcct gaggatgacg tgttcttcat
     2281 cgtggacgtg aagattgagg acatcggggt atacagctgc acggctcaaa acagtgcggg
     2341 gagcgtctct gcaaacgcaa ccctgaccgt gctagagaca ccgtcgtttt tgcggccctt
     2401 gttagacaga actgtcacca agggagaaac agcagtcctg cagtgcattg ctggagggag
     2461 cccgccccct cggctgaact ggacaaaaga tgacagccct ttggtggtga ccgagaggca
     2521 ctttttcgca gcaggcaatc agctgctgat cattgtggac tcggacgtca gtgacgcggg
     2581 gaaatacacg tgcgagatgt ccaataccct tggtactgag agaggcaatg ttcgcctcag
     2641 tgtgatccct actccaacct gcgactcccc tcacatgact gccccgtcgc tggacggtga
     2701 cgggtgggcc actgtgggcg tggtcatcat agccgtggtt tgctgtgtgg tgggcacgtc
     2761 cctcgtatgg gtggtcatta tataccacac aaggcggagg aacgaggact gcagcattac
     2821 caacacagat gagaccaact tgcccgccga tatccctagt tatttatcat ctcaggggac
     2881 attagctgac aggcaggatg ggtacatctc ctcagagaac ggaagccacc accagttcgt
     2941 cacttcttcg ggaggtggat ttttcttgcc acaacatgac agtgctggga cctgccattt
     3001 tgacgacagc agtgaagcgg atgtggaagc ggcccctgat ccatttctct gcccattcgt
     3061 gagctcctcg ggccctgtgt atctgaaggg gaatctgtac ggcccagatc catttgaagt
     3121 gtatcttcca ggttgcagtt ctgacccgag gatcgcttta atggaccact gtgagtcgag
     3181 ctacacaaag aaggactgct tctcatgcgc tcatccctca gaggaaccct gtgaacggag
     3241 cctcaagagc atcccgtggc cacattctag aaagctcatg aactccgcgt tctctcagaa
     3301 cgagggacct gcggttcaga ctctgcgtct aaacaagtcc gtggatttta gtacaagtcc
     3361 agaaccagga tcggctactt caagtaactc tttcatggga accttcggaa aacctctgag
     3421 gagaccgcaa ctggatgcct tgtcgagctt cgcacaacca ccagactgtc agccaaggcc
     3481 ctgtcacggg aaatcacttt ccccaccaga gctggactct gagtcagaag aagatgaaaa
     3541 agaaaggaca gattttcggg aagaaaatca caggtgtact tatcaacaga tattgcacag
     3601 ttacaggact ccagaccgac agccttgtga ttcagacaca tagactggag gggaccaagg
     3661 aaaagtttcc gcatactacc tcagctgggc ttctatttaa aagacacaga atcctatgtt
     3721 tttaaacaga cttacaaagt ttaaaaa
//
