LOCUS       NM_001127485            3176 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus ligand dependent nuclear receptor interacting
            factor 1 (Lrif1), mRNA.
ACCESSION   NM_001127485 XM_001067954 XM_227573
VERSION     NM_001127485.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3176)
  AUTHORS   Brideau,N.J., Coker,H., Gendrel,A.V., Siebert,C.A., Bezstarosti,K.,
            Demmers,J., Poot,R.A., Nesterova,T.B. and Brockdorff,N.
  TITLE     Independent Mechanisms Target SMCHD1 to Trimethylated Histone H3
            Lysine 9-Modified Chromatin and the Inactive X Chromosome
  JOURNAL   Mol Cell Biol 35 (23), 4053-4068 (2015)
   PUBMED   26391951
REFERENCE   2  (bases 1 to 3176)
  AUTHORS   Nozawa,R.S., Nagao,K., Igami,K.T., Shibata,S., Shirai,N.,
            Nozaki,N., Sado,T., Kimura,H. and Obuse,C.
  TITLE     Human inactive X chromosome is compacted through a PRC2-independent
            SMCHD1-HBiX1 pathway
  JOURNAL   Nat Struct Mol Biol 20 (5), 566-573 (2013)
   PUBMED   23542155
REFERENCE   3  (bases 1 to 3176)
  AUTHORS   Grolimund,L., Aeby,E., Hamelin,R., Armand,F., Chiappe,D.,
            Moniatte,M. and Lingner,J.
  TITLE     A quantitative telomeric chromatin isolation protocol identifies
            different telomeric states
  JOURNAL   Nat Commun 4, 2848 (2013)
   PUBMED   24270157
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On or before May 22, 2008 this sequence version replaced
            XM_227573.4, XM_001067954.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.10397.1,
                                           SRR26643293.13974.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-220               JAXUCZ010000002.1  196995693-196995912
            221-1691            JAXUCZ010000002.1  197005827-197007297
            1692-1961           JAXUCZ010000002.1  197008469-197008738
            1962-3176           JAXUCZ010000002.1  197009499-197010713
FEATURES             Location/Qualifiers
     source          1..3176
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..3176
                     /gene="Lrif1"
                     /gene_synonym="RGD1306520"
                     /note="ligand dependent nuclear receptor interacting
                     factor 1"
                     /db_xref="GeneID:310775"
                     /db_xref="RGD:1306520"
     exon            1..220
                     /gene="Lrif1"
                     /gene_synonym="RGD1306520"
                     /inference="alignment:Splign:2.1.0"
     CDS             159..2408
                     /gene="Lrif1"
                     /gene_synonym="RGD1306520"
                     /note="receptor interacting factor 1"
                     /codon_start=1
                     /product="ligand-dependent nuclear receptor-interacting
                     factor 1"
                     /protein_id="NP_001120957.1"
                     /db_xref="GeneID:310775"
                     /db_xref="RGD:1306520"
                     /translation="MSNRLQTVFLKTAEEKSGSHCISGCMYQVVPTIGTDGKKLLQLL
                     PIPKSSGNLIPVVQSPVMSHGLKGNTEKPVQVTFQTQISSSSTSASVQLPVLQPANTT
                     KYFLTGTIDTSGKDRVTSMGTGNFTPPISNTQNHGVKIHRLTRQTFTIPPSTQNDSSY
                     FIVNTPSLPANVNSSTLPSGPPLTIPAHAEVKPVLASPLPPLVQQKILGTVTTSTSGT
                     VEASQIPAVFYVSPVNSVKIIVDKKTQNIYHKPVTFSTSQIPPNVATKTQLNSGQHPQ
                     AAPVNLIFQEYLQPGIPCLVPVKSSNNVPSKVFNTFVDRKTLGDNTVGTPLLSTNSSS
                     RTQSISVPIKDDGLIMFNGKVLLNKKGTYGLPSKIDQQNSVSSDIPLKDSSQVVSSSL
                     VTEISREVLSSVLVKSKSFQLKTKSLSNSQPAPMAHIKPEKSEKVERPSFSVTSPHTT
                     NQSTHCLKQSKIVFINPVFSDGFRTGQNTPRKENLIQNIRSSVDAATVTSQQCVFRDQ
                     EPQTQYEMASILKKDIQERSNKKYSQGNHTKASYLKNDAEFKKIFGLTKDLRVCLTRI
                     PDHLSSTKSFDSFNNLMKSSSYKDANVVMKEEKKQSFSKKRNAKPMKKMDYTKRRKIE
                     NASDMVMNVMNGTDVANSQLLSSILPISDIAQHNIITSHSTTREDKRTETEHCCHEKQ
                     EKGTLSSSTSFEQSNYFNKNYTEDIFPVTPPELEETIRDEKIRRLKQILREKEAALEE
                     LRKKMHQKQ"
     exon            221..1691
                     /gene="Lrif1"
                     /gene_synonym="RGD1306520"
                     /inference="alignment:Splign:2.1.0"
     exon            1692..1961
                     /gene="Lrif1"
                     /gene_synonym="RGD1306520"
                     /inference="alignment:Splign:2.1.0"
     exon            1962..3176
                     /gene="Lrif1"
                     /gene_synonym="RGD1306520"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cggaagccgg gggagccacc ctcttgtcta tcttcggcca tacacttgtg ttcgctcccg
       61 tcagtgcctg cggctccaca ctcgcgctct gattcgcgcc tacttgggga ccctgtcccc
      121 acgctactca ctaccctgtc ccctcccacc catctaaaat gtctaataga ctccagaccg
      181 tctttctgaa aaccgcagaa gaaaagtcag gctcgcactg tatttcaggg tgcatgtatc
      241 aagtagttcc tacgattggc accgatggaa aaaaacttct gcaattactt ccaattccta
      301 aatcttctgg aaatcttatc ccagtagttc aatctccagt catgtctcat ggtttgaaag
      361 ggaatacaga aaaaccagtt caagttactt ttcaaactca gatttccagc tcttccacaa
      421 gtgcatcagt tcaattgcct gttttgcagc cagccaatac tacaaaatat tttcttacag
      481 gaacaataga tacatcagga aaagatagag ttacttctat ggggactgga aattttacac
      541 caccaatttc taacactcag aatcatggtg tgaaaattca tagactcacc aggcaaacat
      601 ttactattcc tccctcaaca caaaatgact catcttattt tatagtcaat accccaagtc
      661 tcccagcaaa tgtgaattct tcaactttgc cttctgggcc tcctttaacg attccagccc
      721 atgctgaagt gaaacctgtg cttgcatcac ccttgcctcc tttggttcag caaaagatac
      781 ttggaactgt aaccacaagt acctcaggaa cagttgaggc ctcgcagata ccagcagttt
      841 tttatgtatc tcctgtaaac tcagtaaaaa ttattgttga caagaaaact cagaatattt
      901 accacaaacc agtgacattc agtacctcgc aaattccacc aaatgttgct acaaaaacac
      961 agttaaacag tggtcagcat cctcaagctg ctccagtgaa cttgattttt caagagtatc
     1021 tacagcctgg aattccatgt cttgttcctg ttaagtcttc aaataatgtg ccttcaaaag
     1081 ttttcaatac ttttgtagat aggaaaactc tgggagataa tacagtaggt acacctttgt
     1141 tgagtaccaa cagttctagc aggacacagt ccataagtgt gcctattaaa gatgatggtt
     1201 tgataatgtt taatgggaaa gtcttgttga ataaaaaggg gacatatggt ctgccatcaa
     1261 aaattgacca gcagaattct gtttcttctg atattccact aaaagattca tcacaggtag
     1321 taagttcaag tctggtcaca gaaatatcca gagaggtttt aagtagtgtt ttggttaaaa
     1381 gtaaatcttt tcagttgaag acaaaatcac tttccaattc ccagcctgct cccatggccc
     1441 atataaaacc agagaagagt gaaaaagtgg agagaccatc tttttctgtc acaagtccac
     1501 atactacgaa ccagtccact cactgcctta aacagagtaa aattgtattt ataaacccag
     1561 ttttttcaga tggatttagg acaggacaga atacccccag aaaagaaaat ctcatccaga
     1621 acatacgttc ctctgttgat gcagcaactg ttacttctca acagtgtgtt ttcagagacc
     1681 aagaaccaca gacccagtat gagatggcat caatattaaa aaaagatatt caagaaagaa
     1741 gtaacaagaa atattctcaa ggaaaccata ccaaggcatc atatctgaag aatgatgctg
     1801 aatttaaaaa gatatttggt ctcactaaag atttgagagt gtgtcttact cgaattcctg
     1861 accatctgag ctctacaaaa agttttgatt cctttaacaa tttgatgaaa agtagttctt
     1921 acaaagatgc aaacgttgtg atgaaggaag aaaaaaaaca gagtttctct aagaaaagaa
     1981 atgcaaaacc catgaagaaa atggattaca caaaaaggag aaaaattgaa aatgctagtg
     2041 acatggtcat gaacgtcatg aatggaactg atgttgctaa ttcccaactc cttagtagta
     2101 ttttaccaat atcagacata gcacaacata acattatcac aagccatagt acaaccaggg
     2161 aagacaagag aactgaaaca gaacactgct gtcatgagaa gcaggaaaaa ggcacattaa
     2221 gttcaagcac atcttttgaa caaagtaatt attttaataa aaactatact gaagatatat
     2281 ttccagtgac accaccagaa ctagaagaaa ccatcagaga tgaaaaaata agaagactta
     2341 agcaaattct aagagaaaaa gaagcagctc ttgaagaatt gcgtaagaag atgcaccaaa
     2401 aacaataaaa tgtctatggg ttaaagactt atattactac agtagttccc tcttgcctgt
     2461 catggatccc cagtggatgc ctgaaactga aggtgatacc aaatcttata taaaaccact
     2521 ctaaagtcat gacgtttgtt aacaactaaa tgtctactta gaaaaataac aggcaagtta
     2581 tatacagtac aaatatactg aatgaagaag ataattgtta ccctcaacag aacactggaa
     2641 tttttataat gctactcaga aagatagttt aaatgttaca aattccttct ttctggagtt
     2701 tctcatcaat acttaggtgt gtatgatggg gaacaaaaag caactgcaaa ttataaagga
     2761 ctgctctctt gtaaaggcat tctcaaagta tcattgtata tgaaacttga ggagttccaa
     2821 aaaggattga gtcatatgac ttgtcagtaa tctacatgaa gtattttgac ttacttgttt
     2881 tggaagaaaa gtttgggtat ttttctgtga aatgcaactc cccagattgg agtattttgt
     2941 ataagttttt tgttaatatt ttatcttcaa ctaaattcct caggttttac cctaagaata
     3001 ttgtgtatta aaattctaca atccaagata tggagtcagc tgtaagcata actttaccat
     3061 tgagtttata tgtggactgt cttggtcttc ttcccaaaaa atgatatgac ctgttgttga
     3121 tatttttatt tcatcaagaa aatctattat aataaatgta ttcaaatatt tttcaa
//
