LOCUS       NM_001108024            3012 bp    mRNA    linear   ROD 04-JUN-2024
DEFINITION  Rattus norvegicus leucine rich repeat and fibronectin type III
            domain containing 5 (Lrfn5), mRNA.
ACCESSION   NM_001108024 XM_001076173 XM_234219
VERSION     NM_001108024.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3012)
  AUTHORS   Choi,Y., Nam,J., Whitcomb,D.J., Song,Y.S., Kim,D., Jeon,S.,
            Um,J.W., Lee,S.G., Woo,J., Kwon,S.K., Li,Y., Mah,W., Kim,H.M.,
            Ko,J., Cho,K. and Kim,E.
  TITLE     SALM5 trans-synaptically interacts with LAR-RPTPs in a
            splicing-dependent manner to regulate synapse development
  JOURNAL   Sci Rep 6, 26676 (2016)
   PUBMED   27225731
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3012)
  AUTHORS   Zhu,Y., Yao,S., Augustine,M.M., Xu,H., Wang,J., Sun,J.,
            Broadwater,M., Ruff,W., Luo,L., Zhu,G., Tamada,K. and Chen,L.
  TITLE     Neuron-specific SALM5 limits inflammation in the CNS via its
            interaction with HVEM
  JOURNAL   Sci Adv 2 (4), e1500637 (2016)
   PUBMED   27152329
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3012)
  AUTHORS   Mah,W., Ko,J., Nam,J., Han,K., Chung,W.S. and Kim,E.
  TITLE     Selected SALM (synaptic adhesion-like molecule) family proteins
            regulate synapse formation
  JOURNAL   J Neurosci 30 (16), 5559-5568 (2010)
   PUBMED   20410109
REFERENCE   4  (bases 1 to 3012)
  AUTHORS   Morimura,N., Inoue,T., Katayama,K. and Aruga,J.
  TITLE     Comparative analysis of structure, expression and PSD95-binding
            capacity of Lrfn, a novel family of neuronal transmembrane proteins
  JOURNAL   Gene 380 (2), 72-83 (2006)
   PUBMED   16828986
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473947.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_234219.4, XM_001076173.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMEA5760393,
                              SAMEA5760396 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q23"
     gene            1..3012
                     /gene="Lrfn5"
                     /note="leucine rich repeat and fibronectin type III domain
                     containing 5"
                     /db_xref="GeneID:314164"
                     /db_xref="RGD:1309357"
     exon            1..292
                     /gene="Lrfn5"
                     /inference="alignment:Splign:2.1.0"
     exon            293..463
                     /gene="Lrfn5"
                     /inference="alignment:Splign:2.1.0"
     exon            464..1868
                     /gene="Lrfn5"
                     /inference="alignment:Splign:2.1.0"
     CDS             484..2643
                     /gene="Lrfn5"
                     /note="leucine-rich repeat and fibronectin type-III
                     domain-containing protein 5"
                     /codon_start=1
                     /product="leucine-rich repeat and fibronectin type-III
                     domain-containing protein 5 precursor"
                     /protein_id="NP_001101494.1"
                     /db_xref="GeneID:314164"
                     /db_xref="RGD:1309357"
                     /translation="MEKFLFYLFLIGIAVRAQICPKRCVCQILSPNLATLCAKKGLLF
                     VPPNIDRRTVELRLADNFVTNIKRKDFANMTSLVDLTLSRNTISFITPHAFADLRNLR
                     ALHLNSNRLTKITNDMFSGLSNLHHLILNNNQLTLISSTAFDDVFALEELDLSYNNLE
                     TIPWDAVEKMVSLHTLSLDHNMIDNIPKGTFSHLHKMTRLDVTSNKLQKLPPDPLFQR
                     AQVLATSGIISPSTFALSFGGNPLHCNCELLWLRRLSREDDLETCASPALLTGRYFWS
                     IPEEEFLCEPPLITRHTHEMRVLEGQRATLRCKARGDPEPAIHWISPEGKLISNATRS
                     LVYDNGTLDILITTVKDTGAFTCIASNPAGEATQTMDLHIIKLPHLLNSTNNIHEPDP
                     GSSDISTSTKSGSNASSSNGDTKMSQDKIVVAEASSSTALLKFNFQRNIPGIRMFQIQ
                     YNGTYDDTLVYRMIPPTSKTFLVNNLASGTMYDLCVLAIYDDGITSLTATRVVGCIQF
                     TTEQDYVRCHFMQSQFLGGTMIIIIGGIIVASVLVFIIILMIRYKVCNNNGQHKVTKV
                     SNVYSQTNGAQMQGCSVTLPQSMSKQAMGHEENAQCCKVASDSAIQSSETCSSQDSST
                     TTSALPPTWTSSAPVSQKQKRKTGTKPSAEPQSEAVTNVESQNTNRNNSTALQLASCP
                     PDSVTEGPTSQRAHTKPNALLTNVDQNVQETQRLESI"
     exon            1869..2581
                     /gene="Lrfn5"
                     /inference="alignment:Splign:2.1.0"
     exon            2582..2625
                     /gene="Lrfn5"
                     /inference="alignment:Splign:2.1.0"
     exon            2626..3012
                     /gene="Lrfn5"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtgtgtgcgc ggccgccctg cttctctgcc cgctccccgg gcgcggagcc accggtttca
       61 tggggcgatt tgcgctgatt ccccacccag cgcgacctgc gagcagcgac ggcaggggca
      121 ggagccacct ctctgactcc ctaggatgcg ggtgctgagc aatggcaaag ggcagcgaag
      181 tgatgagcaa gaccccagta cgactgtgaa agccacctgg agccaccttg cctggatctt
      241 acctgccggc agaaagtctt cctatgaccg tctttccccc tagaggcacc agactccccc
      301 cattcagcca ggtgtggaga agacatgtag tagctgataa ccttccgtct gacatcactc
      361 tcagaaccag cattggaaat gcgtttaccc tgccagtctt ctgcagcagc caggccaagc
      421 actgactcct tcatggtagt aaggaactct tcagactcca gaagctctta atcctgatct
      481 acaatggaaa aatttctttt ttacctgttt ctcattggca tagctgtgcg agctcagatc
      541 tgtccaaagc gttgtgtctg tcagattttg tctcccaatc ttgcaaccct ttgtgccaag
      601 aaagggcttc tgtttgttcc accaaacatt gacagaagaa ctgtggaact acggctggca
      661 gacaattttg ttacaaatat caaaaggaaa gattttgcca atatgaccag cttggtggac
      721 ctgactctat ccaggaatac aataagtttt attacacccc atgcttttgc tgatctacga
      781 aatttgagag cattgcattt gaatagcaac agattgacta aaattacaaa tgatatgttc
      841 agtgggcttt ccaatctcca ccatttgata ttgaacaaca atcagctgac tttaatttct
      901 tccacagcat tcgacgatgt ttttgccctt gaggagctgg acctgtccta taataatcta
      961 gaaacgattc catgggatgc ggtagagaag atggtgagct tgcacactct tagtttggat
     1021 cacaacatga ttgacaacat tcctaaggga actttctccc acttgcacaa gatgactcgg
     1081 ctagatgtaa catcaaataa actgcaaaag ctgcctcctg accctctctt tcagcgagca
     1141 caggtgctgg ccacctcagg aatcataagc ccatcgacat ttgcattgag ttttggtggg
     1201 aaccccttgc attgcaattg tgagttactg tggctgaggc gactgtcaag agaagatgac
     1261 ctggagacct gtgcttctcc tgccctttta actggtcgtt atttttggtc aattcctgag
     1321 gaagagtttt tatgtgagcc tccactcatt actcgtcata cacacgagat gagagtcttg
     1381 gagggtcaaa gggcaacact gaggtgcaaa gctagaggag accctgagcc tgccattcat
     1441 tggatttctc ctgaagggaa gctgatttca aatgcaacaa gatcactggt gtatgataat
     1501 ggaactcttg acatccttat aacgactgta aaagatacag gagcatttac ctgtattgct
     1561 tccaatcctg caggggaagc aacgcaaacc atggatcttc acataattaa actcccacac
     1621 ctactaaaca gcaccaacaa tatccatgag cctgatcctg gttcctcaga tatctctacg
     1681 tccacaaagt caggttcgaa tgctagcagt agtaacggtg atacaaagat gagtcaagat
     1741 aaaattgtgg tggcagaagc atcttcgtca acagcattac ttaaatttaa ttttcaaaga
     1801 aatattcccg gaattcgtat gtttcaaatc cagtacaatg gtacttatga tgacaccctt
     1861 gtttacagaa tgatacctcc tacgagcaaa acatttctgg tcaataatct ggcttctgga
     1921 actatgtatg acttgtgtgt cttggccata tatgacgatg gcatcacttc cctcactgcc
     1981 acaagagtcg tgggttgcat ccagtttact acggaacagg attatgtccg ttgccacttt
     2041 atgcagtccc agtttttggg tggcaccatg attattatca ttggtggaat cattgttgca
     2101 tccgtgttgg ttttcatcat catactaatg atccggtata aggtttgtaa caataatggg
     2161 caacacaagg tcaccaaggt tagcaacgtt tattctcaga ctaacggggc tcagatgcaa
     2221 ggatgcagtg tcacgctgcc ccagtccatg agcaagcaag ccatgggcca tgaagagaat
     2281 gcccagtgct gtaaagttgc cagtgacagt gcgattcagt cttcagaaac atgttcgagt
     2341 caggactctt ctactactac ctctgctttg cctcctacct ggacttcaag tgcgcctgtg
     2401 tctcaaaagc agaaaagaaa gactggcacg aagccaagtg ctgagccgca gagtgaagct
     2461 gtcacaaatg ttgagtctca aaacactaac aggaacaact caactgcctt gcagttagct
     2521 agctgccctc ctgattctgt tacagagggg cccacatctc aaagagcaca taccaagcca
     2581 aatgctttgc tgactaatgt tgaccagaat gtccaggaaa cacagaggct ggagtccata
     2641 taaagagtac cacttctctc tctcctgaga acagttgccc ctgatatttt tactggataa
     2701 aatttgaaaa tgttccagtt cacagcagtg gattgttgaa ctgcttgtcc cagaaggaac
     2761 tgctcatggg agccaaagcg acaatgtctc tgatacagtg gaactggctc cctcaccaca
     2821 tggttcatcc ccttttaaaa ccaaattttt ttcttctgat ctacaagtat tttttttaag
     2881 aaaggaagga gaacaatgcc ttcattggca tcccgttctg taccaatcca tcctacattg
     2941 ccctccatga tttaacagac tgtagaatct tgaataatct atatcacttt aacaaataaa
     3001 tgttttacta tg
//
