LOCUS       NM_001107502            2048 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus leucine rich repeat and fibronectin type III
            domain containing 3 (Lrfn3), mRNA.
ACCESSION   NM_001107502 XM_001075911 XM_218483
VERSION     NM_001107502.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2048)
  AUTHORS   Lie,E., Ko,J.S., Choi,S.Y., Roh,J.D., Cho,Y.S., Noh,R., Kim,D.,
            Li,Y., Kang,H., Choi,T.Y., Nam,J., Mah,W., Lee,D., Lee,S.G.,
            Kim,H.M., Kim,H., Choi,S.Y., Um,J.W., Kang,M.G., Bae,Y.C., Ko,J.
            and Kim,E.
  TITLE     SALM4 suppresses excitatory synapse development by cis-inhibiting
            trans-synaptic SALM3-LAR adhesion
  JOURNAL   Nat Commun 7, 12328 (2016)
   PUBMED   27480238
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2048)
  AUTHORS   Swanwick,C.C., Shapiro,M.E., Vicini,S. and Wenthold,R.J.
  TITLE     Flotillin-1 mediates neurite branching induced by synaptic
            adhesion-like molecule 4 in hippocampal neurons
  JOURNAL   Mol Cell Neurosci 45 (3), 213-225 (2010)
   PUBMED   20600927
  REMARK    GeneRIF: Data reveal a flotillin-1 signaling pathway for
            hippocampal neurite branching that is regulated by synaptic
            adhesion-like molecule 4.
REFERENCE   3  (bases 1 to 2048)
  AUTHORS   Seabold,G.K., Wang,P.Y., Chang,K., Wang,C.Y., Wang,Y.X.,
            Petralia,R.S. and Wenthold,R.J.
  TITLE     The SALM family of adhesion-like molecules forms heteromeric and
            homomeric complexes
  JOURNAL   J Biol Chem 283 (13), 8395-8405 (2008)
   PUBMED   18227064
REFERENCE   4  (bases 1 to 2048)
  AUTHORS   Morimura,N., Inoue,T., Katayama,K. and Aruga,J.
  TITLE     Comparative analysis of structure, expression and PSD95-binding
            capacity of Lrfn, a novel family of neuronal transmembrane proteins
  JOURNAL   Gene 380 (2), 72-83 (2006)
   PUBMED   16828986
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473979.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_218483.4, XM_001075911.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC158862.1, DN933945.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132263, SAMD00132265
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..2048
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..2048
                     /gene="Lrfn3"
                     /gene_synonym="Salm4"
                     /note="leucine rich repeat and fibronectin type III domain
                     containing 3"
                     /db_xref="GeneID:308495"
                     /db_xref="RGD:1305567"
     exon            1..1431
                     /gene="Lrfn3"
                     /gene_synonym="Salm4"
                     /inference="alignment:Splign:2.1.0"
     CDS             17..1897
                     /gene="Lrfn3"
                     /gene_synonym="Salm4"
                     /note="leucine-rich repeat and fibronectin type-III
                     domain-containing protein 3; synaptic adhesion-like
                     molecule 4"
                     /codon_start=1
                     /product="leucine-rich repeat and fibronectin type-III
                     domain-containing protein 3 precursor"
                     /protein_id="NP_001100972.1"
                     /db_xref="GeneID:308495"
                     /db_xref="RGD:1305567"
                     /translation="MAVLPLLLCLLPLAPASSPPQPATSSPCPRRCRCQTQSLPLSVL
                     CPGAGLLFVPPSLDRRAAELRLADNFIAAVRRRDLANMTGLLHLSLSRNTIRHVAAGA
                     FADLRALRALHLDGNRLTSLGEGQLRGLVNLRHLILSNNQLAALAAGALDDCAETLED
                     LDLSYNNLEQLPWEALGRLGNVNTLGLDHNLLASVPAGAFSRLHKLARLDMTSNRLTT
                     IPPDPLFSRLPLLARPRGSPASALVLAFGGNPLHCNCELVWLRRLAREDDLEACASPP
                     ALGGRYFWAVGEEEFVCEPPVVTHRSPPLAVPAGRPAALRCRAVGDPEPRVRWVSPQG
                     RLLGNSSRARAFPNGTLELLVTEPEDGGTFTCIAANAAGEATAAVELTVGPPPPPQLA
                     NSTSCDPPRDGEPDALTPPSAASASAKVADTVAPTDRGVQVTEHGATAALVQWPDQRP
                     VPGIRMYQIQYNSSADDILVYRMIPADSRSFLLTDLASGRTYDLCVLAVYEDSATGLT
                     ATRPVGCARFSTEPALRPCAAPHAPFLGGTMIIALGGVIVASVLVFIFVLLLRYKVHG
                     VQPPGKAKATAPVSSVCSQTNGALGPVPSAPAPEPAAPRAHTVVQLDCEPWGPSHEPA
                     GP"
     exon            1432..2048
                     /gene="Lrfn3"
                     /gene_synonym="Salm4"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccacccctg cccgcgatgg ccgtccttcc actactcctt tgcctgctac cgctggcccc
       61 cgcctcatct ccaccccagc cggccacatc cagcccctgc ccccgccgtt gccgctgcca
      121 gacccagtcg ctgcccctaa gcgtgttgtg cccaggggcg ggccttctgt tcgtgccgcc
      181 atcactggat cgccgcgcag cggagttgcg cctggcagac aacttcatcg cggcagtgcg
      241 tcgtcgagac ctggccaaca tgacaggcct gctgcatttg agcttatcta gaaacaccat
      301 ccgccatgtg gcagctggcg ccttcgccga cctacgtgcc ctgcgtgccc tgcacctaga
      361 tggcaataga ctgacctcgc tgggcgaggg tcagctgcgc ggcttagtca acttgcgcca
      421 cctcatcttg agcaacaacc agctagcagc cctggcagct ggtgcactag acgactgtgc
      481 cgagaccctg gaggacctcg atctctctta taataacctt gagcagctgc cctgggaggc
      541 tttgggtcgc ctgggcaatg tcaacacgtt gggccttgac cacaatttgt tggcttcggt
      601 gcctgctgga gccttttccc gcctgcacaa gttggcgcga ctggacatga cctccaaccg
      661 cctgaccacc attcctcctg acccactctt ttcccgcctg ccactgcttg cccggcctag
      721 aggctcacca gcctctgctc tggtgctggc cttcggggga aaccccctgc attgcaactg
      781 tgaactggtg tggctgcggc gcctggctcg ggaagacgac ctcgaggcct gtgcctcacc
      841 acccgctctg gggggccgct acttctgggc cgtgggtgag gaggagtttg tgtgtgagcc
      901 acccgtggtg acccaccgct cacctcccct ggcagtgccc gcaggtcggc cagctgccct
      961 gcgatgccgg gcagtagggg acccagagcc acgagtgcgt tgggtatcac cccagggtcg
     1021 gctgctgggc aactccagcc gtgcccgtgc cttccctaat gggaccctgg agctactggt
     1081 cactgagcca gaagatggtg gtacattcac ttgcattgca gccaatgctg ctggcgaggc
     1141 cactgctgct gttgagctga ccgtgggtcc ccctccacct ccccagctag ccaatagcac
     1201 cagctgtgac cccccgcggg acggggaacc cgacgccctc accccgccct ctgcggcttc
     1261 ggcctccgcc aaagtggccg acaccgtggc ccctaccgac cgtggtgtcc aagtgactga
     1321 gcatggggcc acagcagctc ttgtccagtg gccagatcaa cggcccgtcc caggcatccg
     1381 catgtaccag atccagtaca acagctctgc cgacgacatc ctcgtttaca ggatgatccc
     1441 agcggacagt cgctccttcc tgctgactga cctggcgtca ggccgtacct atgatctgtg
     1501 tgtgctcgca gtttatgagg acagtgccac cgggctaaca gccacacggc ccgtgggctg
     1561 cgctcggttc tccacggagc ctgcacttcg gccttgtgct gcaccacacg caccgttcct
     1621 gggcggcacc atgattattg cgctgggagg tgtcatcgtc gcttctgttc tggtcttcat
     1681 tttcgtgcta cttctacgct acaaggtgca cggagtccaa ccgccgggca aggccaaggc
     1741 cacagcacct gtcagcagcg tttgctccca gaccaacgga gccctcggcc ccgtgcccag
     1801 tgcgcctgcc cctgagcctg ctgcaccaag ggcccatact gtggtccaat tggactgtga
     1861 gccctggggg cccagtcacg aacctgcagg accctagccg agggcccacc tctatggttc
     1921 ctctggatcc agacatccct cgggacctgg cctcagactc accaaattgc tcacggtttt
     1981 taaaactctg atggggaggg tgtcggggtc accggggcac aacaagaaag tcctattttt
     2041 ctaagttt
//
