LOCUS       NM_001127694            3204 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus leucine rich repeat and fibronectin type III
            domain containing 1 (Lrfn1), mRNA.
ACCESSION   NM_001127694
VERSION     NM_001127694.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3204)
  AUTHORS   Morimura,N., Inoue,T., Katayama,K. and Aruga,J.
  TITLE     Comparative analysis of structure, expression and PSD95-binding
            capacity of Lrfn, a novel family of neuronal transmembrane proteins
  JOURNAL   Gene 380 (2), 72-83 (2006)
   PUBMED   16828986
REFERENCE   2  (bases 1 to 3204)
  AUTHORS   Ko,J., Kim,S., Chung,H.S., Kim,K., Han,K., Kim,H., Jun,H.,
            Kaang,B.K. and Kim,E.
  TITLE     SALM synaptic cell adhesion-like molecules regulate the
            differentiation of excitatory synapses
  JOURNAL   Neuron 50 (2), 233-245 (2006)
   PUBMED   16630835
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000001.1.
            
            On Jan 18, 2018 this sequence version replaced NM_001127694.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.2147.1,
                                           SRR26643293.2263.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-33                JAXUCZ010000001.1  92874828-92874860
            34-88               JAXUCZ010000001.1  92878295-92878349
            89-1528             JAXUCZ010000001.1  92879012-92880451
            1529-3204           JAXUCZ010000001.1  92887309-92888984
FEATURES             Location/Qualifiers
     source          1..3204
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q21"
     gene            1..3204
                     /gene="Lrfn1"
                     /note="leucine rich repeat and fibronectin type III domain
                     containing 1"
                     /db_xref="GeneID:365222"
                     /db_xref="RGD:1304707"
     exon            1..33
                     /gene="Lrfn1"
                     /inference="alignment:Splign:2.1.0"
     exon            34..88
                     /gene="Lrfn1"
                     /inference="alignment:Splign:2.1.0"
     exon            89..1528
                     /gene="Lrfn1"
                     /inference="alignment:Splign:2.1.0"
     CDS             123..2423
                     /gene="Lrfn1"
                     /note="leucine-rich repeat and fibronectin type III
                     domain-containing protein 1; synaptic adhesion-like
                     molecule 2; 60S ribosomal protein L38-like"
                     /codon_start=1
                     /product="leucine-rich repeat and fibronectin type III
                     domain-containing protein 1 precursor"
                     /protein_id="NP_001121166.1"
                     /db_xref="GeneID:365222"
                     /db_xref="RGD:1304707"
                     /translation="MAPGPFSSGLLSPPPAALPFLLLLWAGASRGQPCPGRCICQNVA
                     PTLTMLCAKTGLLFVPPAIDRRVVELRLTDNFIAAVRRRDFANMTSLVHLTLSRNTIG
                     QVAAGAFADLRALRALHLDSNRLAEVRGDQLRGLGNLRHLILGNNQIRKVESAAFDAF
                     LSTVEDLDLSYNNLEALPWEAVGQMVNLNTLTLDHNLIDHIAEGTFVQLHKLVRLDMT
                     SNRLHKLPPDGLFLRSQGGGPKPPTPLTVSFGGNPLHCNCELLWLRRLTREDDLETCA
                     TPEHLTDRYFWSIPEEEFLCEPPLITRQAGGRALVVEGQAVSLRCRAVGDPEPVVHWV
                     APDGRLLGNSSRTRVRGDGTLDVTITTLRDSGTFTCIASNAAGEATAPVEVCVVPLPL
                     MAPPPAAPPPLTEPGSSDIATPGRPGANDSATERRLVAAELTSSSVLIRWPAQRPVPG
                     IRMYQVQYNSSADDSLVYRMIPSTSQTFLVNDLAAGRAYDLCVLAVYDDGATALPATR
                     VVGCVQFTTAGDPAPCRPLRAHFLGGTMIIAIGGVIVASVLVFIVLLMIRYKVYGDGD
                     SRRIKGTSRSPPRVSHVCSQTNGSSAQQASAPPAPDRYEALREVAVPAAIEAKAMEAE
                     ATSTELEVVLGRSLGGSATSLCLLPSEETSGEESRAVTGPRRSRSGALGPPTSAPPTL
                     ALVRGGSPARPRPQQRYSFDGDYGALFQSHSYPRRARRTKRHRSTPHLDGAGGGAAGE
                     DGDLGLGSARARLAFTSTEWMLESTV"
     exon            1529..3204
                     /gene="Lrfn1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtaccggccc aggccctgac tccttgaaga gagatgaaga aaccgagatt cagagaggtt
       61 cagacacttg cccgaggtca cacagctagt ctctcccact cctcctgcct cccccgtgca
      121 ccatggctcc aggccccttc tcctccgggc tcctctcgcc accacctgct gctctccctt
      181 ttctgctgct gctctgggca ggagcatctc gtggccagcc ctgccccggt cgctgcatct
      241 gtcagaacgt ggcacctaca ctgaccatgc tgtgtgccaa gaccggcctg ctcttcgtgc
      301 cacccgccat cgacaggcgt gtggtagagc tgcggctcac tgacaacttc attgcggctg
      361 tgcgtcgtcg agacttcgcc aatatgacca gcctggtcca cctcaccctg tctcgaaaca
      421 ccattggcca ggtagcagct ggcgcctttg ctgacctccg tgctctccgg gccctgcatc
      481 ttgacagcaa tcgtcttgca gaagtgcgag gggaccagct ccggggcttg ggtaacctcc
      541 gccacttgat ccttggcaac aatcagatcc gtaaggtgga gtcggcagcc tttgacgctt
      601 tcctgtccac cgtggaggac ctggatctat cctacaacaa cctggaggca ctgccatggg
      661 aggcggtggg tcagatggtg aacttgaaca ccctcacgct ggaccacaac ctcattgatc
      721 acattgcgga gggcaccttc gtgcagctgc acaaactcgt gcgcttggac atgacctcta
      781 accgcctaca taaactgccc cccgacggac tgttcctgag gtcccagggc ggtgggccca
      841 agccacctac cccactgacc gtcagcttcg gtggcaaccc gctgcactgc aactgtgaac
      901 tgctctggct tcggcgcctg accagggagg atgacttgga gacatgtgcc acgcccgagc
      961 atctcactga ccgctatttc tggtccatcc ccgaggagga atttctctgt gagcccccgc
     1021 tcatcacacg acaggcaggc ggccgggccc tagttgtgga gggccaggct gtcagtctgc
     1081 gctgccgggc ggtgggtgac ccagagcccg tggtgcattg ggtggcaccg gatgggcggc
     1141 tgctggggaa ctccagccgg actcgggtcc gtggtgacgg aacgctggat gtgactatca
     1201 ccaccctgag ggacagcggt accttcactt gcatagcctc caatgctgca ggggaagcca
     1261 ctgcacctgt ggaggtatgt gtggtgcctc tgccactcat ggcgccccca cctgctgccc
     1321 cgccgcctct cactgaacct ggttcttctg acatcgccac accgggcaga cctggtgcca
     1381 acgactcagc cactgagcgc aggcttgtgg ctgctgaact tacgtccagc tctgtgctca
     1441 tccgctggcc ggcccagagg ccagtgcctg gcatccgcat gtaccaagtg caatacaaca
     1501 gctctgcgga tgactcccta gtctacagga tgatcccttc taccagccag accttcctgg
     1561 tgaatgattt ggcggctggc cgcgcctatg atttgtgtgt gttggcagtc tacgacgatg
     1621 gggccaccgc tctgccggcc accagagtgg tgggctgtgt gcaattcacc accgcgggag
     1681 atcctgcacc atgccgcccg ctgagggccc acttcttggg cggcaccatg atcatcgcca
     1741 tcgggggcgt catcgtagcc tcggtcctcg ttttcatcgt tctgctcatg attcgctaca
     1801 aagtgtatgg cgatggggac agccgccgca tcaaggggac gtccagatcg ccccctcggg
     1861 tcagccacgt gtgctctcag accaatggtt caagtgcaca gcaagcctcc gccccaccag
     1921 ctccagaccg ctacgaggcg ctgcgggagg tggctgtccc tgcagccatc gaggcaaagg
     1981 ccatggaggc cgaggcgact tccactgagc tagaggtggt gcttggacgc tctctgggtg
     2041 gctcggccac ctctctgtgc ttgctgccct ccgaggaaac ttcaggggag gaatctaggg
     2101 ccgtaaccgg ccctcgaagg agccgttcgg gggccttggg gcctccaact tcagcacccc
     2161 caacgctagc tctggttcgt gggggatccc cggcccggcc gaggccacaa caacgctatt
     2221 cctttgatgg ggactacggg gcgctgttcc agagtcacag ttacccgcgc cgcgcccggc
     2281 ggacaaagcg ccaccggtcc acgccccacc tggacggggc tggagggggc gcggccgggg
     2341 aggacggaga cctggggctg ggctccgccc gggcacgcct ggccttcacc agcaccgaat
     2401 ggatgctgga gagtacggtg tgagcggcgg gcgcacgggc accgggacgc ctgtgggccg
     2461 cacttagttg cccagcccgg ccggatgcgg gggaggctgg agagaaggga cgcgcgaggg
     2521 gcggggccta ccgcagtcaa ggccacgccc accagcctcc ggattggagg aaggccgccg
     2581 gcctctccga ctccacccct ctgccctgtc ccccgcgcgc tcgcggacct cgccggagcc
     2641 ggtgccttac acagcgaagc gcggggaggg gcggggcccc cccacactgc agcactgaga
     2701 cacgagtccc ctaccctacc cgggaccctg gggcaggggc gaggggccca ttccttgtat
     2761 ctggctggac tagatctctt ctgccccgcg gcggcctcca aagcctcccg tcccctcacc
     2821 cagccccatc cctggtccca ccagtctggt ttggagggag gggcttcttt tttctctcta
     2881 tgtcctagtc tttcctgccc tctgtcgtct gttttaagtc cttccctact tgtctccctt
     2941 ttttctgtcc cattgtcgtc tcttctccct ctgccctccc ttgtttttgg ttttttgttt
     3001 gtttgtttgt tttttgtttt gtccagtgtc cgtgtctctc ccgattccct gtcctcacca
     3061 tcttccgggc aggtcccact gaaggaccag actcttctat cttccttatc cccacaatga
     3121 attccccaca caaacaaaaa ccaaatccca ctccggagcc gggaccctcc gccgcagcag
     3181 aattaaactt ttttctgtgt ctga
//
