LOCUS       NM_001270418             809 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus leucine rich colipase-like 1 (Lrcol1), mRNA.
ACCESSION   NM_001270418 XM_002727982 XM_003752615
VERSION     NM_001270418.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000012.1.
            
            On Dec 5, 2020 this sequence version replaced NM_001270418.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: JQ258942.1, SRR26360172.409565.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-95                JAXUCZ010000012.1  51997594-51997688   c
            96-223              JAXUCZ010000012.1  51988976-51989103   c
            224-349             JAXUCZ010000012.1  51987577-51987702   c
            350-475             JAXUCZ010000012.1  51987283-51987408   c
            476-598             JAXUCZ010000012.1  51987050-51987172   c
            599-809             JAXUCZ010000012.1  51985814-51986024   c
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /map="12q16"
     gene            1..809
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /note="leucine rich colipase-like 1"
                     /db_xref="GeneID:100363238"
                     /db_xref="RGD:2323402"
     exon            1..95
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /inference="alignment:Splign:2.1.0"
     exon            96..223
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /inference="alignment:Splign:2.1.0"
     CDS             110..601
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /note="leucine-rich colipase-like protein 1;
                     rCG21611-like"
                     /codon_start=1
                     /product="leucine-rich colipase-like protein 1 precursor"
                     /protein_id="NP_001257347.2"
                     /db_xref="GeneID:100363238"
                     /db_xref="RGD:2323402"
                     /translation="MSVMVRTLLLLLLLLLLLLLWAVPTFQNDNVKVVSAYKGIGEMC
                     QYNSECQSNCCVTNSLNPQKFCTPQTVFLQCVPWRKPNGYLCEEKTECHSNCCIRTSN
                     NPDKFCSAKSIFLQCVSWRKPEGEVCQTHSECWSLCCLPLSENSLPHCTKRTGLLALC
                     LPV"
     exon            224..349
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /inference="alignment:Splign:2.1.0"
     exon            350..475
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /inference="alignment:Splign:2.1.0"
     exon            476..598
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /inference="alignment:Splign:2.1.0"
     exon            599..809
                     /gene="Lrcol1"
                     /gene_synonym="Clpsl3"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cctgtaacct tctacttcaa ggctgacgtc ggctcggaaa ctgcagtttg gctgctctca
       61 ctgtacagag gagcaagtgg acctgaggca aggaggccca acgtgagata tgtctgtcat
      121 ggtgaggacg ctgctgctgc tgctgctgct gctgctgctc ctgctgctct gggctgtgcc
      181 cacattccag aatgacaacg taaaggtggt ttcagcctac aaggggatcg gagagatgtg
      241 tcaatacaat tctgagtgtc agagcaactg ctgtgtcacc aacagcctga acccacagaa
      301 attctgcacc ccccagacgg tgtttttgca atgtgtgccc tggaggaagc caaatgggta
      361 cctctgtgaa gaaaagacag aatgccacag caactgttgc atcaggacta gcaacaaccc
      421 agacaagttc tgctcagcaa agtccatctt cttgcagtgt gtgtcttggc gcaagcctga
      481 aggagaagta tgccaaaccc actctgaatg ctggagcctg tgctgcctcc cgctgagcga
      541 gaacagcctt ccccactgca caaagcgcac cgggctcctg gccctctgcc tgcccgtgtg
      601 agtgaacatg accttgtggg atacagaact aaagctggac ttcagagagc agagaatgct
      661 ttgctcacat ccagaccgtt cccttatttg ggttctgaaa atctgtaggg attagagatg
      721 tctgttgctt gttgttaatg tgaattcctc gagtcccact cgtgaagcat ccggggacag
      781 atcacaggat tgctgctctg ttactacac
//
