LOCUS       XM_039100174            4933 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leucine rich repeats and calponin
            homology domain containing 2 (Lrch2), transcript variant X1, mRNA.
ACCESSION   XM_039100174
VERSION     XM_039100174.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100174.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4933
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4933
                     /gene="Lrch2"
                     /note="leucine rich repeats and calponin homology domain
                     containing 2; Derived by automated computational analysis
                     using gene prediction method: Gnomon. Supporting evidence
                     includes similarity to: 10 ESTs, 6 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 29 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:680591"
                     /db_xref="RGD:1590569"
     CDS             16..2412
                     /gene="Lrch2"
                     /codon_start=1
                     /product="leucine-rich repeat and calponin homology
                     domain-containing protein 2 isoform X1"
                     /protein_id="XP_038956102.1"
                     /db_xref="GeneID:680591"
                     /db_xref="RGD:1590569"
                     /translation="MAASQGGGGNSGGGGCGGGGSGGGSGAAGGGGGGGGGGGGGAGA
                     GGGGGCGGTVAVPIPVPTLFGQPFPNGPQWHSGSLQPQHTVRSLDRALEEAGNSGILS
                     LSGRKLREFPGSGYDLTDTTQADLSRNRFTEIPSDVWLFAPLETLNLYHNCIKTIPEA
                     IKNLQMLTYLNISRNLLSTLPKYLFDLPLKVLVVSNNKLVSIPEEIGKLKDLMELDIS
                     CNEIQVLPQQMGKLHSLKELNIRRNNLHVLPDELGDLPLVKLDFSCNKVTEIPVCYRK
                     LHQLQVIILDNNPLQVPPAQICLKGKVHIFKYLNIQACCRMDKKPDSLDLPSLNKRMP
                     SQPLTDSMEDFYPNKNHGPDSGIGSDNGEKRLSTTEPSDDDTISLHSQVSESNREQTS
                     RTDSLVTGTKPDSQKDQEVYDFIDPNTEEVAVPEQGDTHIGSFVSFLKGKEKCPEKSQ
                     KNEELGNEKKVDKEQLLPEEDDDLKEVTDLRKIAAQLLKQEQKNRWRPLSYRTSFSDK
                     LFQRTRAAGRKSRILNHSTSVMRNKLKQTVECEKSVSADEGNSPLSPLAWQPLENQKD
                     QIVDQQWPESQPIIWQNEERRRSKQIRKEYFKYKSTRKNSSGNENEEQESDNAHMSPQ
                     SPVSSEDYDRSDGFSHGPFGLKPRSAFSRASRQEYGAADPGFTMRRKMEHLREEREQI
                     RQLRNNLESRLKVILPDDIGAALMDGVVLCHLANHIRPRSVASIHVPSPAVPKLSMAK
                     CRRNVENFLDACKKLGVSQERLCLPHHILEERGLVKVGVTVQALLELPTTKASQLSMA
                     "
ORIGIN      
        1 ctctctccca ggaacatggc ggcgagtcag ggaggcggtg ggaacagtgg gggcggcggc
       61 tgcggtggag gtggaagtgg cggtggcagt ggcgcggctg gaggaggagg aggtggtggt
      121 ggaggaggag gtggcggggc cggggcggga ggaggtggcg gctgtggcgg gaccgtggcg
      181 gtgcccatcc cggtaccgac tcttttcggt cagccgttcc ccaatgggcc gcagtggcac
      241 tcggggagct tgcagcctca gcacacagtg aggagcctgg accgggccct ggaggaggcg
      301 gggaactctg gcatcctgag cctcagtggc aggaaactca gagagttccc gggcagcggt
      361 tacgacctga cggacaccac ccaagcagat ctttccagaa atcgttttac agaaattcct
      421 tcagatgtgt ggttattcgc accactcgaa actttaaacc tatatcataa ctgcatcaaa
      481 accattcccg aagccattaa gaatttgcag atgttaacat accttaacat tagtcgaaat
      541 cttctatcaa cattgccaaa atacctattt gaccttcccc ttaaagtttt ggttgtcagc
      601 aataataaac tcgtatccat tccagaagaa attggaaaat taaaagattt gatggaattg
      661 gacattagct gcaatgagat tcaggtcctt cctcaacaaa tgggaaaatt gcattcactt
      721 aaagagttaa atataagaag aaataatctt catgttttgc cagatgaatt aggagatctc
      781 cccttagtga agttggattt ctcctgtaat aaagtgactg aaattcctgt ttgctatagg
      841 aaattgcatc agttacaagt aataattttg gataacaatc cattgcaagt accaccagca
      901 cagatatgct taaagggtaa agtacacata tttaagtact taaatataca agcctgttgt
      961 agaatggata agaaaccaga ctccctggat ctcccatcac tgaataaaag aatgccttct
     1021 cagcctctta cagacagcat ggaagatttt tatccaaata aaaaccatgg ccctgactct
     1081 ggaatcggaa gtgataatgg agagaagcga ttgtctacaa cggaaccatc agacgatgac
     1141 accatcagcc ttcactctca agtctcagaa tcgaatagag agcaaacatc aagaactgac
     1201 agtcttgtaa caggaaccaa gcctgattct cagaaagacc aggaggtgta tgattttatt
     1261 gatcccaaca cggaagaggt agcagttcct gaacaaggag atacacatat tggatcattt
     1321 gtttctttcc ttaaggggaa ggaaaagtgc cctgaaaaat ctcagaaaaa tgaagaactt
     1381 ggaaatgaaa aaaaagttga caaagagcag ttgctgccag aagaagatga tgatttgaaa
     1441 gaagtaactg acttgaggaa gatagctgct cagttactga agcaggaaca gaagaacaga
     1501 tggaggcctt taagttatag aacatcattc agtgacaaac tcttccagag gaccagagca
     1561 gcaggacgga aatcaaggat tcttaatcat tcaacttctg tcatgagaaa taagctgaaa
     1621 caaactgtgg aatgtgaaaa gagtgtctca gcagatgaag ggaattcacc attatcacct
     1681 cttgcatggc agccattaga aaatcagaag gatcaaatag ttgatcaaca gtggccagaa
     1741 tcccagccta taatctggca aaatgaagag aggaggcgga gtaagcagat cagaaaagaa
     1801 tatttcaagt acaaatcaac aaggaagaat tcaagtggca atgagaatga ggagcaagag
     1861 agtgataatg ctcatatgtc accacagtct ccggtatcat ctgaggacta tgacaggtct
     1921 gatggctttt cacacggtcc ctttggcttg aagcctagat cagccttcag tcgtgcatct
     1981 cgtcaagaat atggggcagc agatccagga tttacaatga gaagaaagat ggagcattta
     2041 cgggaagagc gtgaacagat tcggcagctt cgcaataatc ttgaatccag attaaaagtc
     2101 attctgcctg atgacatagg agctgcactg atggatggag ttgttctttg ccatttggcc
     2161 aatcacataa ggccacgctc cgtagctagt attcatgtgc catcaccagc agtgcccaag
     2221 ctgagcatgg caaaatgtcg aagaaatgta gaaaattttc ttgatgcttg caaaaagttg
     2281 ggtgtttcac aggagagact ctgcttgcct caccatattt tggaagaacg aggtcttgtg
     2341 aaagttggtg tcacagttca ggccctcctt gaattaccta ctacaaaggc atctcagctt
     2401 tctatggctt gatgtgacat tgaaagcatt atacgtgtat aatttcatgt atttgaaatg
     2461 atttccggta tctcaaaatc atgaagaatg tccagtaaca acagtttgcc ttaggtttct
     2521 ttcttttaga ttcacataag atatcagata tgaactctga gttttccaag caatttttgg
     2581 aagaaaattg gattaattta ataagagttt ttgataaatt aaaattcttt tattttgtga
     2641 ctcagtaacc ttgatgaatt tccagaatgc aaattcgtac aaaattgaaa acatactttc
     2701 aatttaacaa tcacattaag ttgaatattt ttacatcact gtatactagt gaacatctag
     2761 gtcacgtaat catgttttag gaaaaaaatt ctatatttga gttacttcat atacttctag
     2821 cttatacaca atctcttcaa tattttgtct ttgtttccta gcaaaaatga gtagaaaaat
     2881 caaaaccctg gcattattca attcttttag tactatcagt tggtgccaaa atattttcag
     2941 ttatactgta ggttgtttac atgtgaagtg cctgtgtaat tgatgaatct taaatagtct
     3001 taagcatttt tgcaatttct ttttatgtat taatagaatc aatggaattt ttaaatattt
     3061 tggtaggttt tgtatggtca gtaatatgtg aggatttacg tgtgcctcac attggtggtt
     3121 tcttagttaa tgcattgcag tttcccttga attggttatt tcatgttgtc aaaaaatgtt
     3181 aatatgctta atttatgcta tttaattttg caaaaccgta gtcattattt taatcatttt
     3241 ttcggaagag tattttattt ctgtgttgag aacgttacac aaagcagtaa ggctttggaa
     3301 agctagggaa gtactattgt caaggacatt tggatgcaac tgctatgttt gggttcgtat
     3361 ctcaccttaa agaagcattc agtacataag tgctgccttc aattttcaga gagtggccat
     3421 taagaaacag gttttgattc aaaaaatctg tccctttctg gagcatgtat accttatgat
     3481 cctcaagtaa cttgatgttg aattaaacac agtctggttc atggaataga atgttcagta
     3541 aagtccttgc ttgatttgga gatgtataaa cttacagtga tactagggca ggaatttttc
     3601 caaaacatta ctgtgatagc taactcagtt tcctatagaa gagccttcat attcactttt
     3661 gtagtaacca agctagtatc atttcttaac tgtgtgatta tttgcactta ttacctctta
     3721 atatggatgc aacttagtaa aaacgttggt ctaggatatt tcaaagggca tttataaaat
     3781 gtaaaatgtc atgtgccaaa tactatggta aggattgggt ttaggaataa atctacattt
     3841 tttgtcagtc attatgaagc catacatttc aatcttggct tcagaataca gatgtgtttt
     3901 tacattccca agaagtcaaa ttcgaactat taaagagtca agctttttat actgtaagtt
     3961 ttaagaatta aattattaat aatttattat ttaaatattt gatcaaatta gttatgacta
     4021 aatagttgga tctgaaaata tccccaatga cataggtaat ttagtaagta ccttagtcga
     4081 tgagttttta accttgacag ttgacagcat tacagactta aaaactttta acaaccaaaa
     4141 caatcattca taattctctc atggttattg tgctatagaa ttgctcttat tacttaatgt
     4201 tgtattattt tcctagtagt tttgtgcttt gttattattg aaatagttgt gactttttag
     4261 acaattcttt tgctacattt cacttgtcag ttaactatta ccttaaagag aaagcacacc
     4321 agaacttcgg tgctctgtcg tctttatagc taatacaaat tgttttcaag atgggtccct
     4381 ttgaggtcct taattattat tgtgccaaaa ggcaataaca acatcacttc taaggcagtt
     4441 tttcagcata gtccacaatg acaaacttat tccaagaccc tgacatattt atgttagtag
     4501 tttttaagta taaattttat gctaaatatt tttatgacat atatttactt caattattga
     4561 tttaagaatc atcattattt ggattttttt tatttgagga ggattgaata atcaaagaat
     4621 attttattgg gcccaaatat cattaggtag ctacttctat taaactttat gaccatatgg
     4681 cacaagaaag aagtgatgtt ggatatgttt gaattgaaat gagtaaaaat gcataaccat
     4741 ttgtttaata attatcttta tagaatgcta gtttaatgac ttttctaact gaattttttg
     4801 aagaattcag aaatgtttgt attagtcaca gatttatcat aattgatttt ctgatgcatt
     4861 taaaaaataa atggaacact aaatgtatat taccgatgca aactgtggat aaaattgaat
     4921 gaaaaaaatc tca
//
