LOCUS       NM_001398722            5180 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus LRAT domain containing 2 (Lratd2), mRNA.
ACCESSION   NM_001398722 XM_039080205
VERSION     NM_001398722.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5180)
  AUTHORS   Guo,Z., Neilson,L.J., Zhong,H., Murray,P.S., Zanivan,S. and
            Zaidel-Bar,R.
  TITLE     E-cadherin interactome complexity and robustness resolved by
            quantitative proteomics
  JOURNAL   Sci Signal 7 (354), rs7 (2014)
   PUBMED   25468996
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5180)
  AUTHORS   Adam,P.J., Boyd,R., Tyson,K.L., Fletcher,G.C., Stamps,A.,
            Hudson,L., Poyser,H.R., Redpath,N., Griffiths,M., Steers,G.,
            Harris,A.L., Patel,S., Berry,J., Loader,J.A., Townsend,R.R.,
            Daviet,L., Legrain,P., Parekh,R. and Terrett,J.A.
  TITLE     Comprehensive proteomic analysis of breast cancer cell membranes
            reveals unique proteins with potential roles in clinical cancer
  JOURNAL   J Biol Chem 278 (8), 6482-6489 (2003)
   PUBMED   12477722
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000007.1.
            
            On Dec 22, 2021 this sequence version replaced XM_039080205.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643297.25980.1,
                                           SRR26643287.18431.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-492               JAXUCZ010000007.1  94275954-94276445   c
            493-5180            JAXUCZ010000007.1  94270753-94275440   c
FEATURES             Location/Qualifiers
     source          1..5180
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="7"
                     /map="7q33"
     gene            1..5180
                     /gene="Lratd2"
                     /gene_synonym="Fam84b; RGD1562236"
                     /note="LRAT domain containing 2"
                     /db_xref="GeneID:120093666"
                     /db_xref="RGD:1562236"
     exon            1..492
                     /gene="Lratd2"
                     /gene_synonym="Fam84b; RGD1562236"
                     /inference="alignment:Splign:2.1.0"
     exon            493..5180
                     /gene="Lratd2"
                     /gene_synonym="Fam84b; RGD1562236"
                     /inference="alignment:Splign:2.1.0"
     CDS             589..1521
                     /gene="Lratd2"
                     /gene_synonym="Fam84b; RGD1562236"
                     /note="family with sequence similarity 84, member B"
                     /codon_start=1
                     /product="protein LRATD2"
                     /protein_id="NP_001385651.1"
                     /db_xref="GeneID:120093666"
                     /db_xref="RGD:1562236"
                     /translation="MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDED
                     VEPQPPPQGLDGGALSDSGDRPSLPPPQPYDPRQHEVECSVFYRDECIYQKSFAPGSA
                     ALSTYTPENLLNKCSPGDLVEFVSQAQYPHWAVYVGNFQVVHLHRLEVSNSFLTDASQ
                     GRRGRVVNDLYRYKPLSPSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIG
                     GELRIGKQPYRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPA
                     EPDEGDSDAARTTPSPLRPPALGSEEENGESAVH"
ORIGIN      
        1 ggctccgaga gactaagctg gttacaggaa agaccggagc tccccgaacc tcctctgtct
       61 ctttaaatgc cacgggctgc gctcccgccc gggagccccg agccggatct acaatcccgt
      121 ccctcccgct ccggcgcttg ttgctcgcct aaaccgagcg ggagctgccg cccggggaag
      181 cccagctagc tccttctgct ttcctcctgt cgccccacct ttccggaaat ttgcgtgagg
      241 ggtcgtgcag caaggagcgc gaacaagcat tgccacccca ccgtcttcaa gtcttggggg
      301 tctacgcagc cgcgggggtc ggcaggggag aaatgcgtcc ttccccgaag cccagcttcg
      361 cggtggtctg cactgcgagt ggaggcactg cggagcccac acctgagaac tcgccctaga
      421 agtctcgggt gcggcagggt gcccctcccg gtcccctagg gcttctagct ctccgggaga
      481 gagtcggcgc aggtggcttt agcccctgct cggggaccag tgccaatgac tctgatggtg
      541 gtttcgcttt ctcctcttga agtcctgtga acaagcgtcc ccagcgtaat gggtaaccag
      601 gtggagaaac tgacccacct aagttacaag gaagttccca cggccgaccc gaccggcgtg
      661 gatcgagacg atgggccccg catcggagtc tcttatattt tttccaatga cgacgaggat
      721 gtggaacctc agccaccgcc ccaggggctt gatggcggag ctttgtccga ctcgggggac
      781 cggccttcct tgcccccgcc gcagccctac gacccgcggc agcacgaggt ggaatgctcg
      841 gtgttttatc gtgatgaatg catctatcag aaaagcttcg cgccgggatc ggcggcgctg
      901 agcacctata caccggagaa tttactcaac aagtgcagtc cgggtgacct ggtggagttt
      961 gtatcgcagg cgcaataccc gcactgggct gtctacgtgg gcaatttcca agtggtgcat
     1021 ttgcaccggc tggaggtgag caacagcttt ctgaccgatg cgagccaggg ccggcgcggc
     1081 cgcgtggtca acgatttgta tcgctacaaa ccactgagcc ctagcgctgt agtgcgcaac
     1141 gcactggccc acgtgggcgc caaggagcgc gagctcagtt ggcgcaactc agagagcttt
     1201 gccgcctggt gccgctatgg caaacgcgag ttcaagatcg gtggcgagct gcgcatcggc
     1261 aagcagccct accgtttgca gattcagctc tcggctcagc gcagccatac tctcgagttc
     1321 cagagcctgg aggacttgat catggagaag cggcgcaacg accaaatcgg acgcgcggcg
     1381 gtgctgcagg agctcgccac gcacctacac ccggctgagc cggatgaggg cgacagcgac
     1441 gcggctcgga ctacaccgtc tcccctgcgc ccccctgctt tgggctctga ggaggagaat
     1501 ggagagtcgg cggtgcactg atacttgacc cgggctcaga gctacaaaag gaagcttttt
     1561 gcagcggcca cacccccttt ctcccttccc caccccctac ccttgggccc catttagtat
     1621 tcctgggacc tttggaaaat gcagagttgg tgaaatgaac aaccggcttt ggacggggga
     1681 ggaggaaggg gagcaggtag gattggctgg tgggtggcta tgggaagcat tttcttcagt
     1741 ccccctcagt ctaccttccc ttctgaagtg gggtaaagtg aacttgcagc ttcaaccctt
     1801 acagatatgg gatcaaattc aacccttcat atacaagcag gcttgaagaa aatctcagag
     1861 cacatacgcc ctgcattccg cctctctgga gccctcccta ctctcaactg ggatgcaggg
     1921 tacaaaggcc agagaggatt ggggcggagc tgcttcgggt ctgttgggag aactgcttat
     1981 ctgcttcccc cactgagctg tgcttgggat cctagaggct ggaatgattt tattttatgg
     2041 gattcccagg gcacagggct actgaaacta caaggcctgg gagcagcaga cagaaaccaa
     2101 acagccctgt attaagtgca gcaaatactt tagcaaactc aggctacagg ctacaaatgg
     2161 attttactac ctccccctcc ctatccccaa gtacctcctc ttgggaagct ggctctaagc
     2221 ggagtctttg gctcccaact ccttccccgg ttacaagtaa atcattgtca agggccagcc
     2281 agggaaagga ttcaattaag gtgccattct gcctcctgtg tttttggcct gctgttgtgg
     2341 actcttagag ctacagtgtc gttatcaagg gaagcaatag ccctttgtgt ctctgatcta
     2401 attaaacctg cttggcgtgt tcatctgcag gtcacagatg gggttggctt gtgccacccc
     2461 ataaagtatc ctctaaggaa tcaaccagtg ctaccctgtc aagaattaaa tctctgaacg
     2521 taacccttta aaaaccaagc tggatctagg gatttttttt tctttttgtt tttctctccc
     2581 tggtccccct tcctcaccag acagttgctg tggtagggtt agggttactt tgccatccat
     2641 ggtgtatgaa gttgaattca aggtacaaag tcttgttcta tgtacccaat ttctttatgg
     2701 cttggagaac atcctattca gagcccttca ttaagaaggg tggcattagt cacagatacc
     2761 atgtagtatg ttcagaacag atttgatggc agtcccacac gtaagttggt gacggtggca
     2821 tgtgaacaga ctgaacaggt agcaattggg tctgccactg aacttccatg cactttagta
     2881 caaggcttta tgactgcgac agcctgttgc ctgaacggtg ggcagatctc tgactgctgc
     2941 gtgcttatgg gcgggtgcgg tctgtcaact gttctcaaaa gttgagcata gttaaaggcc
     3001 ttcgctgcct ccccagtcct taccacactg gaactagttc ttagtcattg caacaaaatc
     3061 ttactggagt gtcctgaagc cacggtcatt gtcaggcttc ttgcttgggg atctgtaaat
     3121 cccacttttt tttttttaag cctaaatctt catagtacct cagcacgaaa ccttttcatt
     3181 aattataaag gcattaaatg cactttctgc tttcacagtg cttaccaagc aagtccttgt
     3241 tctttgaatg ttaaggaaga gctacgtaca cactagcctt gctttgggac ctgggaggag
     3301 aaccgttttc tagttgggaa tatagatctg atttccgtgt ttagtgtgct cacaggtatg
     3361 tgattatatg gtcttgtcca tagaacagtg gaaaaagata aacacagacc atgttattta
     3421 gggaaacctt tgtctaacaa gtttggcttg gtgggaaatt gatgcccact gtgtagccta
     3481 cagaagggga ggagtcagaa tggctgtccc catcagctct gaaatggcaa ctctccctgc
     3541 tctcccatgc ttgccttctt cctcagacct caaagatcat actgagtgta gcaggtgact
     3601 tgcgtccatg aagtgctccc caaaggaaga tttttctaag atccacccca cgtggagcat
     3661 tcttcctctt tgaaagttga tctatctcag atgatggttt ctggaatatg ctgccagcaa
     3721 tttttctggt accaataatg ccaaatatgt aatactgtga gctaacacac ttaggagtag
     3781 taagtctaag gtagtggttc tcaacctgtg ggttctgatc cttttggata tcccatgtca
     3841 gatatttata ttgcaattct taacagtagc aaaattaata gttgtgaaat atcaacaaaa
     3901 taattctagg ttgagggtca ctatagcatg agaaactaac cgtattaaag ggtcacagga
     3961 ttagattgag aaccactgct ttaaagaaaa gtacatcaat ttagggttct aagatatagt
     4021 gtcatgtcat ctcttggttt ttaagactgc agtgttgtgg ggaaaccatt ttttatttta
     4081 atgtcctggc aatggctaca tctggcactt taggggaaaa agtatattaa taattttcat
     4141 ctctctttag gaataagaca tagaactatt ttgtattgtg aattatggac attctttgaa
     4201 ggaaagaaat attaattcca gtgtttttcc caagctctgg aagggataag caagaccctg
     4261 tggaacacgt acaaaaagaa accagacaaa ttctattttc ttacccgagc aaatatttta
     4321 ttgagactgc ttatgtatgt caaaggagcc tacaacttca gctacacagc tttttgtatt
     4381 gaaagaactc gtacttttgt agcttttatt ccacatttaa tttaaagtga ctttgtaaca
     4441 ctaaagtgtc tagcagaaga ctttattcca gatgttgaag aaaattttta gtttttatga
     4501 aaatggttca gtggttcagc ttctcaaagc tgcggtgctc ctggccctcc tggcaccacg
     4561 ggacaaagac aaccacatga caacatattt ttttggaagc aaaactttaa ttttatatga
     4621 catatactat ggaaagctaa ggaaatttaa ggaccagtag ttaccttttt ctttctttct
     4681 ttcttaaaat gggatccact gtgttgaaga ctcttgatat catgtacttg tctggctatt
     4741 ttttaaaaca attgaagtag aattgatcat agtcatccaa tgaatttgtt tgaaaaaatt
     4801 agattttatt tgtgaactgt ttaaaaatca ggatcctgat aaatttgact attttattca
     4861 tcacttcatt gtatgttttg ttcttggtta taaatcagga aacgtactcc acatgcattt
     4921 tatttcccag caagctgtag aatctttaat ttgattggag gttgtatgtt aaatcagttt
     4981 tctttcacca cttcttgaga aggcggttcc agtttgaaat tgtatcattt ccttcaaaat
     5041 gaagggccgt acttagttaa ataaaagatt gatcacatct cttaagccat ttcctctcca
     5101 ctctgtctta gtagaataaa agctgtcaag tccttttgaa aaatgttatg agggttccca
     5161 ataaaccatc tattattaga
//
