LOCUS       XM_006247085            2761 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lactoperoxidase (Lpo), transcript
            variant X1, mRNA.
ACCESSION   XM_006247085
VERSION     XM_006247085.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Jan 21, 2021 this sequence version replaced XM_006247085.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2761
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2761
                     /gene="Lpo"
                     /note="lactoperoxidase; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 ESTs, 6 Proteins, and
                     98% coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:287610"
                     /db_xref="RGD:1310051"
     CDS             195..2327
                     /gene="Lpo"
                     /codon_start=1
                     /product="lactoperoxidase isoform X1"
                     /protein_id="XP_006247147.1"
                     /db_xref="GeneID:287610"
                     /db_xref="RGD:1310051"
                     /translation="MKVLLRLLALLASLILLQTAASARNDPPAKTVIICDTVEEVKAS
                     VNKAFLDSRSRLKKAMSAEVRSTRHLSDYLKHAKGRTRTAIRNGQVWEESLKKLTQFL
                     TNATGQGLDLTSLFWKVGCNPPAPAVTCNISNPYRTITGDCNNRKNPALGSANRALAR
                     WLPAEYEDGLSLPFGWTPGKTRNGYPLPQPREVSNQIAGYLNEEDVLDQKRSVLFMQW
                     GQIVDHDLDFAPDTEMGTDNYTKAQCDEHCIQGDNCFPIMFPTGDPKLKTQGKCMSFF
                     RAGFVCPTPPYQSLTREQINALTSFLDASLVYSPEPSMANRLRNLSSPLGLMAVNEEV
                     SDHGRPFPPFVKMKPSPCEVINATAGVPCFLAGDSRASEQILLATSHTLFIREHNRLA
                     RELSTLNPHWDGETLYQETRKIMGAFIQIITFRDYLPILLGDEMQKWIPPYQGYNESV
                     DPRISNVFTFAFRFGHLEIPSTVSRLDENYQPWGSEPELPLHTVFFNTWRLVKDGGID
                     PLVRGLLAKKAKLMHQDRMMTGELRNKLFQPTHTIHGFDLASINIQRCRDHGMPGYNS
                     WRAFCGLSQPKTLEELSAVMENEVLAKKLLDLYGTPSNIDIWLGAIAEPLVPGGRVGP
                     LLTCLLGHQFQRVRDGDRFWWENPGVFTEKQRESLQKLSFSRLVCDNTGITKVPLNPF
                     LANTYPHGFVDCSSVDKLDLSPWAAVQK"
ORIGIN      
        1 agcaaatgca gagctatatc aggtcctcag accctgagtc ctctttccct cctgtgtctt
       61 tctggctctc ctggcctgtg aatattatga gcttgtatag cgagggcatc tgagtttgcc
      121 tgggatttcc ctgttttctg agattccatt gctcacagtg gagctccact gaggaccccg
      181 gtctcatttc agtgatgaaa gtgcttctgc gtctcctggc cctcctggct tccctgatct
      241 tgctccagac tgcagcatct gccagaaatg atccacctgc caaaactgtc atcatttgtg
      301 acacagtgga agaggtcaag gcctcagtca acaaggcctt cctggattcc cggtccaggc
      361 tgaagaaggc catgagtgcc gaggtacgta gcacccgtca tctctcagac tatctcaagc
      421 atgccaaagg ccggacacgc acagccatcc gaaacgggca ggtgtgggag gaatctctaa
      481 agaaactgac ccagtttctc accaacgcca caggtcaagg gctggacttg acttcgctct
      541 tttggaaggt gggctgtaat ccccctgctc cagcagtgac ttgcaacata agtaaccctt
      601 accggaccat cactggagac tgtaacaaca ggaagaatcc agcgctggga tccgccaaca
      661 gggcgctagc tcgatggctg ccggcagagt acgaggatgg actctccctc cccttcgggt
      721 ggacgccggg gaagacgcga aacggctacc ctctcccgca gccccgtgaa gtctctaacc
      781 agatcgccgg ctatctgaat gaggaggatg ttctggacca gaagagatct gtgctcttca
      841 tgcagtgggg tcagatcgtg gaccatgacc tggactttgc ccctgacact gaaatgggga
      901 ctgataacta caccaaagcc cagtgtgacg agcactgtat ccagggagac aactgcttcc
      961 ccatcatgtt cccaactggt gaccctaaac tgaagactca ggggaagtgc atgtctttct
     1021 tcagagccgg atttgtctgc cccacaccac cctaccaatc cctgacccga gagcagatca
     1081 atgctctcac ctctttcctg gatgctagct tagtgtatag ccctgagccg agcatggcaa
     1141 atcgacttcg aaacctcagc agccccttgg gcctcatggc tgtcaatgaa gaagtctcag
     1201 accatggacg gcccttccca cctttcgtca aaatgaaacc cagcccctgc gaggtcatca
     1261 acgccacagc tggtgtgccc tgcttcttgg caggagactc ccgagcctca gagcagatct
     1321 tgctggccac atcccacaca ctttttatcc gggagcacaa ccggttagcc agagaactaa
     1381 gcacactcaa cccacactgg gacggagaga ctctctatca ggagacaagg aagatcatgg
     1441 gagccttcat ccagattatt acctttaggg actatctacc catcctactg ggcgatgaga
     1501 tgcagaagtg gattccccca taccagggct acaatgagtc tgtagacccc cggatttcca
     1561 atgttttcac ctttgccttc cgctttggcc acttggagat cccctctact gtgtcccgcc
     1621 tagatgaaaa ttatcagccg tggggttcag aacctgagct ccccctgcac accgtcttct
     1681 tcaacacctg gaggctggtc aaagatggtg gaattgatcc tctggttcga ggcctgctgg
     1741 ccaagaaggc caagttgatg catcaggaca gaatgatgac gggagagctt cgaaacaagc
     1801 tgttccagcc aactcacacc atccatggct ttgacctggc ttccatcaac atacagcggt
     1861 gcagagacca cgggatgcct gggtacaact cctggagagc tttctgtggc ctgtcccagc
     1921 caaagacact agaggagcta agtgctgtca tggaaaacga ggtgctggcc aagaagctgc
     1981 tggacctcta cggaaccccc agcaacattg atatctggct cggggccatt gctgaacccc
     2041 tggttcctgg gggtcgggta ggacctctct tgacctgtct cttgggccac cagttccagc
     2101 gagtccgaga tggagacagg ttctggtggg agaaccctgg ggtcttcaca gagaagcaac
     2161 gggagtctct acagaagttg tccttctccc gcctcgtctg cgacaacact ggcatcacca
     2221 aggtcccact gaacccattc ctggccaaca cctacccgca tggctttgtg gactgctctt
     2281 cagttgataa gctggacctc tcaccctggg ccgcagtgca gaagtagaac actactgccc
     2341 acagcttcct acattgcgag tgtccatggt ccaagatgcc atttcgaaca attccagtgg
     2401 cctactcctt tcaagttgga caccaagacc aaaggctgcc acagcctttc cagcccctcc
     2461 actcagctgt caccaccctc accaccctct cagcctatgg aaatcatcct ctctgatgac
     2521 acttaggctt cttaagatgt ccttccagct tgtcacacac cacctaccct ctccctgagt
     2581 gatcattggc tgaggctgtg acctttgatc tttatgtttc ctccctcctg tcctcccaga
     2641 ctagatcata agcatcctga gccagagact tctgcctgcc ttgtgattat gacttgttca
     2701 acacacaaag tgctcaataa atatccgact gtcccttcct aggggcagga cttgaaacgg
     2761 c
//
