LOCUS       NM_001399104            2429 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus lysophosphatidic acid receptor 5 (Lpar5), mRNA.
ACCESSION   NM_001399104 XM_003749835
VERSION     NM_001399104.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2429)
  AUTHORS   Lin,M.E., Rivera,R.R. and Chun,J.
  TITLE     Targeted deletion of LPA5 identifies novel roles for
            lysophosphatidic acid signaling in development of neuropathic pain
  JOURNAL   J Biol Chem 287 (21), 17608-17617 (2012)
   PUBMED   22461625
REFERENCE   2  (bases 1 to 2429)
  AUTHORS   Okabe,K., Hayashi,M., Yamawaki,Y., Teranishi,M., Honoki,K.,
            Mori,T., Fukushima,N. and Tsujiuchi,T.
  TITLE     Possible involvement of lysophosphatidic acid receptor-5 gene in
            the acquisition of growth advantage of rat tumor cells
  JOURNAL   Mol Carcinog 50 (8), 635-642 (2011)
   PUBMED   21374735
  REMARK    GeneRIF: Real-time reverse transcription (RT)-polymerase chain
            reaction (PCR) analysis revealed that increased expressions of the
            Lpar5 gene were detected in rat liver-derived hepatoma RH7777 and
            lung-derived adenocarcinoma RLCNR cells.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jan 4, 2022 this sequence version replaced XM_003749835.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643292.19961.1,
                                           SRR26360194.1962690.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760494, SAMN06680412
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-64                JAXUCZ010000004.1  159558445-159558508
            65-2429             JAXUCZ010000004.1  159567852-159570216
FEATURES             Location/Qualifiers
     source          1..2429
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q42"
     gene            1..2429
                     /gene="Lpar5"
                     /gene_synonym="Gpr92; RGD1562580"
                     /note="lysophosphatidic acid receptor 5"
                     /db_xref="GeneID:500317"
                     /db_xref="RGD:1562580"
     exon            1..64
                     /gene="Lpar5"
                     /gene_synonym="Gpr92; RGD1562580"
                     /inference="alignment:Splign:2.1.0"
     exon            65..2429
                     /gene="Lpar5"
                     /gene_synonym="Gpr92; RGD1562580"
                     /inference="alignment:Splign:2.1.0"
     CDS             282..1400
                     /gene="Lpar5"
                     /gene_synonym="Gpr92; RGD1562580"
                     /note="G protein-coupled receptor 92"
                     /codon_start=1
                     /product="lysophosphatidic acid receptor 5"
                     /protein_id="NP_001386033.1"
                     /db_xref="GeneID:500317"
                     /db_xref="RGD:1562580"
                     /translation="MFANSSANTSSTDSSVPQCRDYRSTHRLHMVVYSLVLATGLPLN
                     ALALWVFLRVLRVHSVVSVYMCNLAASDLLFTLSLPLRLSYYARHHWPFPDFLCQTSG
                     AIFQMNMYGSCIFLMLINVDRYAAIVHPLRLRHLRRPLVARRLCLGVWALILLFAVPA
                     ARVHSPTTCKYENVTLSLCFESFSDELWKGRLLPLLLLAETLGFLLPLAAVVYSSGRV
                     FWTLARPDATQSHRRQKTVRLLLANLIIFLLCFVPYNSTLAVYGLLRANLVKNSLQAR
                     DQVRGVLMIMVLLAGANCVLDPLVYYFSAEGFRNTLRNLGAPFHTRPLPTNGTRGELT
                     EPPSESTQNTGQDATSQRLLQPANLGTRTDNGPQDSAL"
ORIGIN      
        1 agttaagagc agcacccagc ccagctcaga gggcaacagg acaggttcca gaggtcccaa
       61 ggaggtctcc acttctgaag aagttgcacc accacgggct tccagccttg gccagtcatc
      121 tgcccccgag gtcacagacc acacgcccat gtcttgcctc tgcttgcctg gggacagact
      181 ctgtatagcc accaggctac caccctggag gtgaaagcca tgctctgacc ttggtgttcc
      241 ctataatgcc tcagactagt ttctctcccc acctggacgc catgtttgcc aattcttcag
      301 ccaacacctc ttctaccgac agctctgtgc cccagtgccg tgactatcgg agtacacatc
      361 gtttgcatat ggtggtctac agcttggtgt tggcaaccgg tcttcctctc aacgctctgg
      421 ctctctgggt cttcctgcgt gtactgcgcg tacactcggt ggtgagtgtg tacatgtgca
      481 acctggcagc cagcgacttg ctcttcaccc tgtcacttcc cctgcgcctc tcctactatg
      541 cacggcacca ctggcccttc ccagacttcc tgtgccagac gtcgggcgcc atcttccaga
      601 tgaacatgta tggcagctgt atctttctga tgctcatcaa cgtggaccgc tatgcggcca
      661 tcgtgcatcc gctgagactg cgccatctgc ggcggcccct cgtggcgcgg cggctctgcc
      721 tgggcgtgtg ggctctcatc ctgctgttcg ccgtgcccgc cgcccgcgtg cacagcccga
      781 ccacctgcaa gtacgagaac gtcaccctga gcctgtgctt cgagagcttc agcgatgaac
      841 tgtggaaggg caggctgctg ccactcctgc tgctggccga gaccctgggc tttctgctgc
      901 ccctggcggc tgtcgtctat tcgtccggca gggtcttctg gacactggcg aggcccgacg
      961 ccactcagag ccaccggcga cagaagaccg tgcgcctcct actggccaac ctcatcatct
     1021 ttctgctgtg cttcgtgccc tacaactcca cgctggcagt ttatgggttg ctgcgggcca
     1081 acctggtaaa gaacagcctt caggcccgcg atcaggtgcg cggagtgctg atgataatgg
     1141 tgctgctggc cggtgccaac tgcgtgctgg atccgctggt ttactacttc agcgccgagg
     1201 gttttcgtaa cactcttcga aacctgggcg ctccgtttca taccaggcct ttgcctacca
     1261 atgggactag aggggagctc accgaaccac cctcagaaag cacccaaaac actgggcagg
     1321 atgccaccag ccagaggcta cttcaacctg ccaatctggg tacacgcacg gacaacggcc
     1381 cccaagattc agccctctga aaggacacag ccatagtgtt tacagttttg tgcctccctc
     1441 aaaagcttag gtggtacttt tgaaggaggt gactttgaag ccactccagc tctagcgtgc
     1501 gggagggaac aagtgtgcaa gcaaggacat tggaatggaa gtttgctgcc gctgacagct
     1561 ttagcctctg actatttaca cagaggaact ctgccccagt atataggaaa ccaagcagtg
     1621 agtgtattca tggctaaaga gccggtatgt ggaacagaag atggatctcc tggatttagg
     1681 tcatcagtct gagagctaac gatcccctga ccttggtgaa tcaactacac agacgttcat
     1741 ctgtcgtctt caaaactaaa actcagggct ggtggtggaa ctgagaaccc acagcctaca
     1801 catgctgggc caacacattc ccagccttac ctgccgacta ctgcgcttac tcaagggcaa
     1861 tggacactgt gccaccagcc ctggcttccc tgcttgggtg ggaggtgtga cacaaatagt
     1921 tctgacccat ttcgtgactc gcaacaagtt agacttgaca cctggcatga ggttgacgca
     1981 gggcagagct gtgcgtgcgt gaagtccctc tcacttgcaa gttcttggtt ccttttctag
     2041 gtcatccttt ttctttttct tttttttttt tttttggttc tttttttcgg agctggggac
     2101 cgaacccagg gccttgcgct tcctaggtaa gcgctctacc actgagctaa atccccagcc
     2161 ccatcctttt tctttctgta gctctcttcc atcctcggtc tttaatattc agtctcactt
     2221 ccctctctct cctccccctg cccccactcc ttatgactga acttggtatg tagcagaggc
     2281 tggccttgaa ctttttcgtt ttgttctctt gttttgaaga caagagtctt gctatgtagt
     2341 tcttgttatc cttgaactca cagagatctg ttggcctctg cctcctaaat gctgggatta
     2401 aagtgtgttc cgctaagaca gattttgac
//
