LOCUS       XM_006234379            8576 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lunapark, ER junction formation factor
            (Lnpk), transcript variant X4, mRNA.
ACCESSION   XM_006234379
VERSION     XM_006234379.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006234379.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006234379.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8576
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8576
                     /gene="Lnpk"
                     /gene_synonym="Lnp"
                     /note="lunapark, ER junction formation factor; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 35 ESTs, 5 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 3 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362151"
                     /db_xref="RGD:1312042"
     CDS             189..1466
                     /gene="Lnpk"
                     /gene_synonym="Lnp"
                     /codon_start=1
                     /product="endoplasmic reticulum junction formation protein
                     lunapark isoform X1"
                     /protein_id="XP_006234441.1"
                     /db_xref="GeneID:362151"
                     /db_xref="RGD:1312042"
                     /translation="MGGLFSRWRAKPSTVEVLENIDKEIQALEEFREKNQRLQKLWVG
                     RLIIYSSILYLFTCLIVYLWYLPDEFIARLVMTLPFFAFPLIIWTLRTVLIFFFSKRT
                     ERNNEALDDLKSQKKKILEEVMEKETYKTAKLILERFDPDSKKAKEFEPPSAGAAATA
                     KPGQEIRQRTAAQRNLSPAPANSNQGPPPQVPVSPGPSKDASAPGGPPERTVAPALPR
                     RLGSPATSVPGMGLHPPGPPLARPVLPRERGALDRIVEYLVGDGPQNRYALICQQCFS
                     HNGMALKEEFEYIAFRCAYCFFLNPARKTRPQAPRLPEFSFEKRQAVEGSSSTGPMLL
                     ESVPSPENQLTEDSLEEQDDLDNSTEQKDDKIPVTEQTNQVIEETSGPEGSEENQEET
                     ENEETSTNEAKSPVLRSDSVSNLELSEDSVVTK"
ORIGIN      
        1 ctcatggggt atggccaggt gatgtatgta tgttttcact ggcttggctg ggattggact
       61 cttctgagct atgcaatgta aacctttttt gctgccttct gcatgacagc tgttctggga
      121 tctcagctgt gacttctttt ggacaactca tgatatttat tattgtgcca agtttctaca
      181 gataaaagat gggtggatta ttttctcgat ggagggcaaa accttcaaca gtagaagttc
      241 tagaaaatat agataaggaa attcaagcat tggaagaatt tagagaaaaa aatcagagat
      301 tgcaaaaatt atgggttgga agattaatta tctattcttc aattctttat ctgtttacat
      361 gtttaattgt gtacttgtgg tatcttcctg atgaatttat agcaagactt gtcatgacac
      421 tcccattctt tgcttttcct ttgatcatct ggacattaag aactgtgctt attttcttct
      481 tttccaagag aacagagaga aataatgaag cattggatga tttaaaatcc cagaagaaaa
      541 agatacttga agaagtcatg gaaaaagaaa cttataagac agcaaaatta attcttgaaa
      601 ggtttgatcc agactcaaag aaagcaaagg agtttgagcc gccatctgct ggagcagctg
      661 caactgcaaa gccaggacaa gagattcgtc agcgaactgc agctcaaaga aacctttccc
      721 cagcaccagc aaactctaat cagggtcctc ctccacaagt tccagtatct cctgggccat
      781 caaaggacgc ttcagctcct gggggaccgc cagaaaggac tgttgctcca gccttaccca
      841 ggcgccttgg atcccctgct acttcagttc ctggaatggg ccttcatcct ccaggcccac
      901 ctttagcaag acccgttctc ccccgagaac gaggtgctct ggatagaatt gttgaatatt
      961 tagttggtga tggcccacag aacaggtacg ccctcatatg tcagcagtgt ttttctcaca
     1021 atggtatggc tttgaaggaa gaatttgaat atattgcttt tcgatgtgcc tactgttttt
     1081 tcttgaatcc tgcaagaaaa acgagacctc aagccccacg gcttccagag tttagttttg
     1141 agaagaggca ggcagtagaa ggctcaagtt caactggtcc catgttacta gaaagtgtgc
     1201 cctcaccaga aaaccagctc actgaagact ctttagaaga acaagatgat cttgataata
     1261 gtactgagca gaaagatgac aaaataccag ttacagagca gacaaaccaa gtgattgaag
     1321 aaacatctgg tccagagggg tcagaagaga accaagaaga gactgagaac gaggaaacat
     1381 cgacaaatga agccaagtca cctgttctca gatctgattc tgtttctaat cttgaactga
     1441 gtgaagactc tgtggtgaca aagtagtaaa tacttccctg tgccttcaac tggatatttg
     1501 tagtcacgtt gacctcagtt actgcttttt ttgtggtact caagaaaaat ttgctctcta
     1561 gatatacttt taatattcat aatgagattg ccctgcaagt tcagtgtatc ccagccctac
     1621 cattaggtat tgaaagtaaa agcacatggt atcagttaat gtgcagagac atggctgata
     1681 gatgctttgt gcattctaaa gtttaaaaag aaacttgttg tctacacgta taacctgtaa
     1741 ataataccgg ttttgacata ggaacaaatt tggctaggaa taattttttc catagtgttt
     1801 aaggattgaa acataattaa gattttgaat acttcaccag taaattttaa ctttggagat
     1861 atttgccagc gggaaggaaa tatctattta ggtgtttaca ttaagtgatg ctgaaagctg
     1921 taaccttaat tacatatgca ttggtacgaa ttctcaataa gaacgcaact caacagtcaa
     1981 gtgcagtatt tctttgatgt cttttatttt acaactgggc caaaggcaca tgatgtatat
     2041 agttagttta tgtttacata ttaataggaa atacatctgc acttgactgt acttgaattc
     2101 ttggtattat ttatatttgt aatataatga tgatatataa atggctttta tgtgtgtgtg
     2161 tgtatgtttt gttaaggaaa ataaagacga cctggcagcg tcttttcttt gttaaatctc
     2221 tagacttctt cacatagtgt cttgatggat aacttggcta tctgaaaaaa cagtcttggt
     2281 agggagaagt cactgtgtga taaatatata acaaattatg ttcttctttt catttagact
     2341 ttcaaaatcg gtgacataag aggtttagtg tttctaatca gaagttaaat ttttctgatt
     2401 ttgaaacata ttatgtcata ggtagtttct aactttgaga gaaatagata cagttttgaa
     2461 gacaaggcag ttaaatttaa tgaaactcac tagatatgta taccaatcat caggtgggaa
     2521 gattcttgat gtaactattc ttaaacataa tatgataatt tgtcctagtt tcctttatgt
     2581 gtcttatatt gaaacagctg atgtgaattt acatcatagg ggagacatgt tacgatagtg
     2641 tatctggcta atcttttggc tattgaatgt ttatttaaac taaatatact tatcatttaa
     2701 aagtttatat ttataattta atacttcatc tgacatatat aaaagaaccc tgtttgttac
     2761 tattctgagg cattttagtt tggtgcccat aaattcaagc atgtggaact ggacttgaat
     2821 gtcagctttg cactcttggg caaacttctc tgcatttatt taatttaatc tgtaaagtga
     2881 aaagaataat atgttttcca taggtactgg gaagttaaaa ataatttata tgatgtgcct
     2941 agctttcttg ctggataatt aatagatagt aggtttcatg gtagaattta ttactattat
     3001 tatggaaggg ccatagatcc tttttttggt agataagaaa gaaaactatg aacattcaat
     3061 tcagttgctc tgaacagaaa atttctgcat taatgtcata tgcatgtgtc aatgacagat
     3121 taaagagatg gagaactgaa actagaatat aatcttctaa aaaacgagat gtgtttattt
     3181 tcattttatg agtataaatg tttcccttgc ataaatgtct gtctccagtg tgtctgcagg
     3241 tatctggagg tcagatacct gggtcgtttg agatgataat tacagatcaa acttggctac
     3301 aagagcagga agggccctta gccactaagc cacttctcca gcttcatgtg acctttctgt
     3361 ttgtaaattt tactaggggt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt
     3421 gagagagaga gagagagaga gagaggacct tgttaggagt taaaaatgcc tgatatgcac
     3481 tgctcaaaaa tgaatacctc agagaaatgg aatttaatga tgaaaccaag aagatataaa
     3541 aacatccccc aaaagaaatg taacagggga ggaagctaga gagggggctc agtgttaaga
     3601 atgacagctg gagggctccc tccctcctgt agctccaggt ctagatctga tgccttctac
     3661 ctggcctcct tataagacac tagcctaatg tgcattctca tccccacgga tacacataac
     3721 tacaaataaa aaaatccaaa tcttaaaagg agctcagtaa aattagcaca acagaggcaa
     3781 ttgtcggtgt atttaaaaca gactcctctt ctgatgttat agtagacaat ggctgaagtg
     3841 aatgagaccc cacatttccg actactaaga ttatttgaag ggactgccct gtccacaaat
     3901 gctcagcttg tcgtcatgtc ctcagtgtgg gctgcagaca gagcttagct tccctttctg
     3961 tctctcctac ccacatcctt ctcctgtggc tctgggactc tcgtctcagg gatgtgccta
     4021 tgctttgccc gttctacctc aagtgtcagc ttaacttttt ttgtttgaca gataccctct
     4081 tcttctccct gtctgaagct aaccctctgc cttttagtcc tgttttgggt cactttatct
     4141 ttgctctgaa ttcttactgc aagggtattt tgttttccca tcaactgtct tcacgatttg
     4201 cttttcttct gtctgtatgt ggagagccta gcagtgccct gcttatatct catgtgacta
     4261 ctcggtactt agccatgctc ttgcttggca gagtggcttg gctgagtgtt ctttttctct
     4321 gagacacctt catcctttag gttctggatg tgcactgccg ttatcttctc tggcttcttg
     4381 ttttcagtgt cccttgaaga cttcctctgc catgtttaaa tgttggtgtt ctctggcttc
     4441 cacctgttgt agttcttatg ctacacattc attctctggg agctctcatc agtgcccagg
     4501 gccttagtaa ccactgtctg tatgaattca gatctctggc ttggtgtttc tttggcttca
     4561 tagctgtgta ttttacccat ctactgccat gatgttgtga agtcagtatt tttttaaaaa
     4621 gaacacttgc tcaaacttgt ttgtcatttt accaaatagt gtaagtattc aagccagaac
     4681 ttaaaatata gtccctcttt ccctctgtct tcaaagtgtt cattcccact ttctccccct
     4741 atatcccagt agaatattgc aatgtagccc agcttgggct taactttgtg acttaaggcc
     4801 tcagattcct gggtgctgga atcattccca agaagtgctg tgccttgctc tcctctgaac
     4861 atttacgttt atattatttg tccattttgt ttggattata ttcacataaa tctgtgttgt
     4921 ttcagtaaac tacatgcgcc ttctgtatgt atgtttatac acaattttgt ttgggggggg
     4981 cagttctatg gggattttgt atcttaagta tggatatgaa acaagatgtc gggagaataa
     5041 gcagctttct tagaggtcca tatcagcatg tggaaaacct gagatctgaa tgcaagcaga
     5101 tcacttgtct ttggcattga acccacagcc ttgtacgtgc ttagcgttgc tctgctgctg
     5161 aactgtttct ccagcttcca aagccttact gttaatcatc actgtattgc cttctaattc
     5221 ctgcctccgt ctcctcaggg tatgaaagct accttttaat cagtccctct gtctgttttc
     5281 agtcatgctg ctttcctgtc cattctgtgc actgggacct cagacctctg cactgtctgc
     5341 agtcttctgt gtttgagagg aaagctgaat gtctattgac tgacaaagtt cggtgcagtt
     5401 tctccccagt tgtctctcac agcaagtttt cgcattacaa ctactgtcac tgctacttcc
     5461 cctctaccac acgcatactt agtatacata ggctattatt ttcagtgctg catatatgta
     5521 ggtttcttcc agttgcctac atttctcaag ctcttcctcc tgaaatacct cctgtttctg
     5581 tagataccga aggagctcaa tatagagctg ttgaattgga atatccttta gaacccaagg
     5641 ttggaaattt tatttattaa actgagtttt tcagcatgta ctcattgtac atacacacct
     5701 tcacagtaga atcaagtctg tagctctgtg tgtgtgtgtg tgtgtgtgtg agagagagag
     5761 agagagagag agagagagag agagagagag gtgggtggag gagaagagat tgattttaat
     5821 tatgtaatga ttgtcattag gtaatatatg ctgagttcca gaatgttaaa tgattgtcag
     5881 gtttaggtca gggatagtgg gcatctgagc caagtcagat ttaatgaagg actatttata
     5941 ttgaagctca aatttttcac tgattcaata ttgatgttta tgatttcttt aacaacttta
     6001 tttctgtttc caactgacag tacctacctt aattagtata ttacatgtta gctttttaga
     6061 agtatcactt gaagggtaga ctgaagagga cagcagtttt gagtggttgt gggcaatgga
     6121 actgctctag gaagttaaca gaaaaaaatt tagcgagttt ctatgtggca taaaaattgt
     6181 agaagacatt agatacagtt cacaaatgaa ctatcaaaaa taattcaagt accaagtaat
     6241 aatcagtaca gaaatggtca ggaattgaga ccttttagaa tttgacttat ttcaagttta
     6301 ttaaatttct ggccaacaga taaaaatatt ccgaatttag acagacagtt ataaatatgg
     6361 aaaagtgtct ttgaaacaag aacaactaaa acgagtgcag aattaaaacc ttattgaatt
     6421 gtaccaatcc ataggcaatt gatgtgtttc agcttcctta ctaccttttt gtaaactact
     6481 acctttcacc tttttagggc attttcaact taaaaaaaaa caaaaaacaa aaaacaaaaa
     6541 aacactacta cctttaactt tcttagggcc caagagatgg cccaccaggt aaggggacca
     6601 ttgccgagtc tgatgaccga ggtccacacg gaggaagggg aggaccgacc tcctcaggct
     6661 gtcctctgac ctctgtgtgc ctgctgtggc acatgtgtgc ccacacacac taatgaaatc
     6721 aatgtgaaaa taagatactc tctaaaatta ttgcagtgga gctgagagaa gtgtgtaagc
     6781 aggaggaact gagttcgggt ctgcagcacc tgcgtaaggt ctggatatgg ctgactgccg
     6841 ctgtcaccca tcatcaaggg gtggtgacag ctgggttcag gcacacgctg gccatccttg
     6901 cctttttcct ttggcttcaa aactgataaa tgttggaagc actctgagaa gattaaaaag
     6961 tattcttgaa aacttccctc agtccagaat tctgtgaaaa gaggccaaat ttttagctac
     7021 tgaaggtttt taccagatcc ctggcgcttg ctttagtaaa actgagaaaa aaataatttt
     7081 catggaaata aatatttctt catctgcttt gaagggtgtc gcaggcgggg catttggtgc
     7141 acataatgcc cacctgtagg tcaggcttat gatctaggta ccttccagtg acttcaggga
     7201 gacaagggtc acatggagat ggaattcatt tcctcaagct ggtttataga gctgcaaata
     7261 ggttttaaac atggcgacta aaattgcttt ctttactacc tgtgtgcgct ccttcggtag
     7321 ctgaaagact taggctaaag ccctgagttt ctcatggtcg tgtggtatct cacatcattt
     7381 gtacaggaga tacctggtgg cttgataggt ctgcttctca gttttcatgg aatagtggac
     7441 atagactatg tttctgggtt cttgtctccc tcttgacctc aaaccaaagt aaaccagaac
     7501 ttggcacaga cacattatgt aaataatcag aaagttagat tcctgttact aagtggtgga
     7561 cttgcctttg ctaacacaag aggttggtgt gctgtttctc tctgaaattc ctatgaatga
     7621 tagatttggg actagagagg gagaactgcc caaagcacta gttgagggct aggatatatt
     7681 gtttttgttc tcttggtgcc tgacatagga gaacctcagt gacatgagtg aactaagatg
     7741 atctaaaccc atgtgatgcg gtgggagaat tgcccagtgc ttagaagagc ctgctagttg
     7801 ggttgggttt aagaattgcg gtaagatcat ttgagttcgg taatcctttt cctacttctt
     7861 aggagatatg taaagatccg tatgtaagag tgtacacaca tacacacaca catacatata
     7921 cactcagttt cactatgtat ttcttgctgg tcttgagttg cagtgcagac cacactggcc
     7981 tttaaactta cagtgctcag cctgccccta gagtcacctg tactgactta ctgactttca
     8041 cttccctgtt tctaacattt gacactgact gatgttgtct tagaacttag acatttctac
     8101 cttttgacat ctggacctag tggggcccag atacacacac acttttacgc aggataattt
     8161 aaggatattt ctttttctat atataggcta gtatatagat tttaaacttg ggttcttacc
     8221 tcaaagcaaa acaggaaagg aatggttcct gtgcttttat taagatgttc caatgtgtgt
     8281 tttatgaatt ataagctgtt tcctaaaact gaaactggct attcatgttt tactgtccat
     8341 tagcaagact tccaaaggct ttgctcacct tctaataagg ggagcatttt tttaaaagtt
     8401 gaaatggttt gctttataaa aacaatcttt caaaagaaat cgaatatact tggaataaag
     8461 ttattctcag ctctgtattc atatagctac agtgtatggt ttttcagagt agaatacttt
     8521 gagtcctgta attgaaattg agtatgaact ggaataaaat tgatattctt gagacc
//
