LOCUS       XM_006248217            1646 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leukemia NUP98 fusion partner 1
            (Lnp1), mRNA.
ACCESSION   XM_006248217
VERSION     XM_006248217.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006248217.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006248217.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1646
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1646
                     /gene="Lnp1"
                     /note="leukemia NUP98 fusion partner 1; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 EST, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 16 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100359918"
                     /db_xref="RGD:2323126"
     CDS             853..1392
                     /gene="Lnp1"
                     /codon_start=1
                     /product="leukemia NUP98 fusion partner 1"
                     /protein_id="XP_006248279.2"
                     /db_xref="GeneID:100359918"
                     /db_xref="RGD:2323126"
                     /translation="MEHRDDDDDNDDVSFAKWMSSFWGHSWRDKDERGLRDHHRLQEA
                     SYRKASLPCPFPAFPSIAPSDCYPRRHSHEDQASRRHLPMRYHRKCSVDGSFREPIEP
                     PRRAHSKMQEFSESFAQHLCLQTKCSPAGPKGRKERNERHCLETNMRSYKKVEDRRTS
                     MKETPGDEPMAPLIEKGPE"
ORIGIN      
        1 tcatatagaa agtaagagtt ctgtaaatgt aacttttttt ttaaacttaa aatgaataga
       61 agtctctggg gttaaaaatt tgtagaagct gtatgaacag aagctagatt tcaaagaaat
      121 atggattgga aggagttaaa agagctttct tggcttctga aaaatgttca gcgattagcc
      181 aattaaaggc tggcagcata ggagcataca ggcataaaaa tgtattaagt tgtacaccta
      241 agatttgcac atttatatgc atgacactca catggatgtg cagctaatac tttaaaaaag
      301 gtatccaact tgacctgaag ataggttttt ctatattatt tttatttatt agaaaagcat
      361 ttagctttag atctggcatg ccaatagctc accaccttga gagctgcagt tgtctgtctc
      421 ttggatgtgg tcctgtttca gagccagcct ggagctgaca agcatattgt gagggtcatg
      481 cttcatcacc attgacagct ggagatgatg ccaccacatg cctttggcag aaaggctcag
      541 ggaaaaccag gcagtggact gtgctgccta cccttaggct gcgaggcaca gccctggaaa
      601 caggaggatt aaaaagcctc tcaatttaaa gagacaaggg ggaggggagt gtgggctgca
      661 cagtttataa atagacagtg ctccaggctg cctgatgatg aagtggttgt ttggtaaatt
      721 tttctttttt aaggatgcca ttatcagaga ccatttcaaa taccagtttc gtttagtgtt
      781 cttggtgggc ttcatcaacc cttgggctat atttctggag ttttaggggc aggcctttaa
      841 tatttagatc ccatggagca cagagatgat gatgatgata atgatgatgt gtcttttgcc
      901 aagtggatga gcagcttttg gggtcacagc tggagagaca aggatgagcg aggactccgg
      961 gaccaccacc gactacaaga agcgagctac aggaaggctt cgctgccctg cccatttcct
     1021 gcatttccca gcattgctcc atccgactgc taccctagaa gacattctca cgaggaccag
     1081 gcatcccgaa gacaccttcc aatgcggtat cacaggaaat gctcagtgga tgggtcattt
     1141 cgggagccaa tagaaccacc aagaagagct cattccaaaa tgcaggaatt ttcagaatcc
     1201 tttgcacaac acctgtgcct tcaaaccaag tgctctcctg cgggacccaa ggggaggaag
     1261 gagagaaatg aaagacattg cctagagact aacatgagat cctacaagaa agtggaggac
     1321 agaaggacct caatgaagga aacacctgga gacgaaccca tggctcctct gattgaaaag
     1381 gggcctgaat aataatgctt tgtttcaaca ttgccaagac agatgtcact ggttgttctg
     1441 agacccagaa cttcctgcag aatgacatct ggaaagggtt ttagcagatg cttagactac
     1501 agtgggcagt tggaatggct gcttctcaag atggcttgtg ttacactcaa actgtctctg
     1561 gcatcttgct tgagtgtacg atgttcctct ccttctgtga taagaagaaa tggtgtttga
     1621 ataaaataaa ggaatccctg acatta
//
