LOCUS       XM_039100951            4629 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lemur tyrosine kinase 3 (Lmtk3),
            transcript variant X1, mRNA.
ACCESSION   XM_039100951
VERSION     XM_039100951.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039100951.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4629
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4629
                     /gene="Lmtk3"
                     /note="lemur tyrosine kinase 3; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 10
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 26 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:691056"
                     /db_xref="RGD:1588641"
     CDS             93..4484
                     /gene="Lmtk3"
                     /codon_start=1
                     /product="serine/threonine-protein kinase LMTK3 isoform
                     X1"
                     /protein_id="XP_038956879.1"
                     /db_xref="GeneID:691056"
                     /db_xref="RGD:1588641"
                     /translation="METSSPRAAVRASGRRFLHLPSILDKMPAPGALILLAAVSASGC
                     LASPAHPDGFALSRAPLAPPYAVVLISCSGLLAFIFLLLTCLCCKRGDVRFKEFENPE
                     GEDCSGEYTPPAEETSSSQSLPDVYILPLAEVSLPMPAPQPAHSGEKLRASPPAPSSD
                     ISTPLGLSRQHLSYLQEIGSGWFGKVILGEVFSDYSPAQVVVKELRASAGPLEQRKFI
                     SEAQPYRSLQHPNVLQCLGVCVETLPFLLIMEFCQLGDLKRYLRAQRPPEGMSPELPP
                     RDLRTLQRMGLEIARGLAHLHSHNYVHSDLALRNCLLTSDLTVRIGDYGLAHSNYKED
                     YYLTPERLWVPLRWAAPELLGELHGSFVLVDQSRESNVWSLGVTLWELFEFGAQPYRH
                     LSDEEVLAFVVRQQHVKLARPRLKLPYADYWYDILQSCWRPPAQRPSASDLQLQLTYL
                     LSERPPRPPPPPPPPRDGPFPWPWPPSHSAPRPGTLSSQFPLLDGFPGADPDDVLTVT
                     ESSRGLNLECLWEKARRGAGRGGGAPPWQPASAPPAPHTNPSNPFYEALSTPSVLPVI
                     SARSPSVSSEYYIRLEEHGSPPEPLFPNDWDPLDPGVPGSQAAQAPSEVPQLVSETWA
                     SPLFPAPRPFPAQSSGSGGFLLSGWDPEGRGAGETLAGDPAEVLGEQGTAPWAEEEEE
                     ESSPGEDSSSLGGGPSRRGPLPCPLCSREGPCSCLPLERGDAVAGWGGHPALGCPHPP
                     EDDSSLRAERGSLADLPLVPPTSAPLEFLDPLMGAAAPQYPGRGPPPAPPPPPPPPRA
                     SAEPAASPDPPSALASPGSGLSSPGPKPGDSGYETETPFSPEGAFPGGGPAEEEGVPR
                     PRAPPEPPDPGAPRPPPDPGPLPLPGSQEKPTFVVQVSTEQLLMSLREDVTKNLLGDK
                     GSTPGETGPRKAGRSPANREKGPGPNRDLTSLVSRKKVPSRSLPVNGVTVLENGKPGV
                     PDMKEKVAENGLESPERGERALVNGEPMSPEAGEKVLANGVLMSPKIEEKVAENGVLR
                     LPRNTERPPETGLRRVPGPWEKMPETGGLAPETLLDRAPAPCEAVLPQNGLEMAPGQL
                     GPVPKSGNPDPGTEWRVPESGGAPRAPGAGKLDLGSGGRAPGGAGTVPAGGPASAVDA
                     KAGWVDNSRPLPPPPQPLGAQQRRPEPVPLKARPEVAPEEEPGVPDNRLGGDMAPNVD
                     EDPPKPERKGPEMPRLFLDLGPPQGNSEQIKAKLSRLSLALPPLTLTPFPGPGPRRPP
                     WEGADAGAAGGEAGGAGAPGPAEEDGEDEDEDEEDEEAAGSRGPGRTREAPVPVVVSS
                     ADGDTARPLRGLLKSPRAADEPEDSELERKRKMVSFHGDVTVYLFDQETPTNELSVQG
                     TPEGDTEPSTPPAPPTPPHPTTPGDGFPNNDSGFGGSFEWAEDFPLLPPPGPPLCFSR
                     FSVSPALETPGPPARAPDARPAGPVEN"
ORIGIN      
        1 cccctccttc cagtgccccc agcgagcagt gttgcgcgcg cagctccggt ccagcctcat
       61 tgagggggac gagtagcagg tattcctgga ccatggagac atcctcgccg agagcggcag
      121 tccgcgcttc cggccgccga ttcctccacc tcccttccat cctggacaag atgcctgcac
      181 ccggcgcact catcctcctg gcggccgtct ccgcctccgg ctgcctggcg tccccagcgc
      241 acccggatgg attcgctcta agccgggccc ctttggctcc gccctacgct gtggtcctca
      301 tttcctgttc gggtctgctg gccttcatct tcctcctcct tacctgtctg tgttgcaaac
      361 ggggtgatgt tcgtttcaag gagtttgaga atccggaagg ggaggactgc tctggggagt
      421 acaccccccc tgcggaggag acctcctcct cacagtcgct gcctgatgtc tatattctgc
      481 cgctggcaga ggtctcactg ccaatgcctg ccccgcagcc tgcacactca ggagagaagc
      541 tcagggcctc ccctcccgcc ccctcctcag acatcagcac ccccctgggc ctgagccgcc
      601 agcacctcag ctacctgcag gagattggca gcggctggtt tgggaaggtg atcctcgggg
      661 aggttttctc agactactcg ccagcgcagg tggtggtgaa ggaactccgg gctagtgcag
      721 ggcccctgga gcagcgcaag ttcatctcag aggctcagcc ctacaggagc ctgcagcatc
      781 ccaacgtcct ccagtgcctg ggtgtctgtg tggagacctt gcccttcctg ttgatcatgg
      841 agttctgcca gctgggggac ctgaagcgat accttcgggc ccagcggcca cctgaaggca
      901 tgtcccctga acttccccca cgagaccttc ggacattaca gaggatgggc ctagagattg
      961 cccgaggact ggcacacctg cactcccaca actacgtgca cagcgatctg gcgctgcgca
     1021 actgcctgct aacttcagac ctgactgtgc gtattggaga ctatgggctg gcgcatagca
     1081 actacaagga agactactac ctgacacccg agcgcctatg ggtgccgctg cgctgggcag
     1141 cgcccgagct gctgggcgag ctgcacggca gctttgtgct agtggatcaa agccgtgaga
     1201 gtaacgtctg gtccctgggg gtgacactct gggagttatt cgagtttggg gcacagccct
     1261 atcgtcacct atccgatgag gaggtcctgg cctttgttgt ccgccagcag cacgtcaagc
     1321 tggcccgacc caggctcaag ctgccctatg ctgactattg gtatgacatc ctgcagtctt
     1381 gctggcggcc accagcccag cgcccctcgg cctctgatct gcagctgcaa ctcacttacc
     1441 tgctgtctga gcggcctccc agaccccctc ctccaccacc ccctccccga gatgggcctt
     1501 tcccctggcc ctggcccccc tcccatagtg cgccacgccc ggggaccctg tcctcgcagt
     1561 tcccccttct ggatggcttc cccggggctg acccagatga tgtactcaca gtcaccgaga
     1621 gcagccgtgg cctcaacctt gagtgcctgt gggagaaggc ccgccgtggt gcaggccggg
     1681 gtgggggagc acctccctgg cagcccgctt ctgcgcctcc tgcaccccac accaatccat
     1741 ccaatccctt ctatgaggca ctgtccaccc ctagcgtgct gccggtcatc agcgcacgca
     1801 gtccctcggt gagcagtgag tactatatcc gcctggagga gcatggttct ccaccagagc
     1861 ccctcttccc caacgactgg gacccgctgg acccaggagt acccggttct caggccgccc
     1921 aggctccctc cgaggtcccc cagctggtgt ccgagacctg ggcctccccc ctcttccctg
     1981 cgccccgacc cttcccggcc cagtcctcgg gatcaggtgg tttcctcctg agtggctggg
     2041 accccgaggg tcggggcgca ggagagaccc tggcaggaga tcctgccgag gtgcttgggg
     2101 aacagggtac cgcaccctgg gcggaagagg aggaggaaga gagctcccca ggcgaggaca
     2161 gcagcagcct tggaggggga cccagccgcc ggggacccct gccctgtccc ttatgcagcc
     2221 gcgagggtcc ctgctcctgc ctgccattgg aacgggggga cgctgtggcc ggctgggggg
     2281 gccaccctgc ccttggttgt ccccaccccc cagaggacga ctcttctctg cgtgcagagc
     2341 ggggctccct ggccgacctg cctctggtcc cccctacctc agcccctctc gagtttctgg
     2401 accccctcat gggggccgca gcgccccagt accccgggcg ggggccacct cccgctcccc
     2461 cccctccacc gccccctccc cgggcctccg cggaaccggc cgcgtccccc gaccccccgt
     2521 cggccctggc cagtccaggc tcaggcctct cgtctccggg ccccaagccg ggggacagcg
     2581 gctacgagac cgagacccct ttttcccccg agggagcctt cccaggtggg gggccggccg
     2641 aggaggaagg ggtccctcgg ccacgggctc cccccgagcc acccgaccca ggagcgcccc
     2701 ggccaccccc agacccgggt cccctcccac tcccagggtc ccaggagaag ccaacctttg
     2761 tagttcaggt gagcaccgag cagctgctga tgtccctacg ggaggatgtg acaaagaacc
     2821 tcctagggga caaggggtcg acacccgggg agacaggacc caggaaggcg gggagaagcc
     2881 ccgcgaacag agagaagggc ccaggcccga acagggacct gacatccctg gtcagcagga
     2941 agaaagtccc cagcaggagc cttccagtga acggggtgac agtgttggag aacgggaagc
     3001 caggagtccc ggacatgaag gagaaggtgg cggagaatgg cctggaatct ccggagagag
     3061 gagagagagc cctggtgaat ggggagccga tgtccccaga ggccggggag aaggtgctgg
     3121 cgaatggggt tctgatgtcc ccaaagatcg aggagaaggt ggcagagaat ggggtcctga
     3181 ggctgcccag gaacacggag aggccgccag agactggact tcggagagtc ccaggaccct
     3241 gggagaagat gcccgagact gggggtctag ctcccgagac gctgctggat cgagcccctg
     3301 cgccctgcga ggcagtcttg ccccagaacg gcttggagat ggcccctggc cagcttggcc
     3361 cagtccccaa gagcgggaac ccggaccccg ggaccgagtg gagagtcccc gagagtgggg
     3421 gggcaccgag agcccccggg gctgggaagc tggacctcgg gagtgggggc cgagccccgg
     3481 ggggcgcggg gacggtcccc gccggcggcc ccgcaagcgc cgtggacgca aaggccggat
     3541 gggtagacaa ctcgagacca ctgccacctc cgcctcagcc actgggggcc cagcagagga
     3601 ggccggagcc agtgcccctg aaggccaggc cggaggtggc cccagaggaa gagccagggg
     3661 tcccagacaa caggctcggc ggagacatgg cccccaacgt agacgaggac ccccccaagc
     3721 cggagaggaa gggcccggag atgccacgct tgttcttgga cttgggacca cctcagggga
     3781 acagcgagca gatcaaagcc aaactctccc ggctctcgct ggcgctccca ccgctcacgc
     3841 tcacgccgtt cccgggcccg ggcccgcggc ggccaccttg ggagggcgcg gacgcagggg
     3901 cagctggcgg ggaggccggc ggggcggggg cgccggggcc agcggaggag gacggggagg
     3961 acgaggacga ggacgaggag gacgaggagg cagcgggctc tcggggaccc gggaggacgc
     4021 gggaagcccc agtgcccgtc gtggtgagca gcgccgacgg ggacacggcc cgcccgctgc
     4081 gggggctgct caagtctcca cgcgcggccg acgagccaga ggacagcgaa ctggagagga
     4141 agcgcaagat ggtctccttc cacggggacg tgaccgtcta cctcttcgac caggagactc
     4201 caaccaacga gttgagcgtc cagggcaccc ccgaggggga cacggagcca tcaacgcccc
     4261 cagcgccccc gacgcctccc caccccacca ccccaggaga tgggtttccc aacaacgaca
     4321 gcggctttgg cggcagtttc gagtgggcgg aggatttccc cctcctcccc ccaccaggcc
     4381 cccccctgtg cttctcccgc ttctccgtct cacctgcgct ggagaccccg gggcctcccg
     4441 cccgggctcc cgacgcccgg cccgcaggcc ccgtggagaa ctgactcccc aaagacccag
     4501 cccttttgca ccccaagaag agggtttgcg agcagaatct tgtgtggacg atggagccat
     4561 tgcccccgac actgacacag cctctgggga ggtgcctgag gctgggccct ccctctcctc
     4621 caccatgtg
//
