LOCUS       XM_039089352            8644 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lemur tyrosine kinase 2 (Lmtk2),
            transcript variant X1, mRNA.
ACCESSION   XM_039089352
VERSION     XM_039089352.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 16, 2024 this sequence was replaced by
            NM_001427236.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8644
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..8644
                     /gene="Lmtk2"
                     /note="lemur tyrosine kinase 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     mRNA, 38 ESTs, 1 long SRA read, 1 Protein, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 186 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304286"
                     /db_xref="RGD:1598332"
     CDS             307..5202
                     /gene="Lmtk2"
                     /codon_start=1
                     /product="serine/threonine-protein kinase LMTK2 isoform
                     X1"
                     /protein_id="XP_038945280.1"
                     /db_xref="GeneID:304286"
                     /db_xref="RGD:1598332"
                     /translation="MPGPPASSPLPMPLLLLLLLTVGSARAAPLPQTGAGDAPVVEVP
                     SLFVILSVCSLMVLIVLIANCVSCCKDPEIDFKEFEDNFDDEIDFTPPAEDTPSVQSP
                     AEVFTLSVPNISLPAPSQFQSSVEGLKSQVARHSLNYIQEIGNGWFGKVLLGETYTGT
                     SVTRVIVKELKVSASPKEQDTFLNSGEPYYILQHPNVLQCVGQCVEAIPYLLVFEFCD
                     LGDLKAYLHNEQEHVRSESQTMLLQRMACEIAAGLAAMHKLHFLHSDLALRNCYLTSD
                     LNVKVGDYGIGFSRYKEDYIETDDKKIFPLRWTAPELVTSFQDRLLTADQTKYSNIWS
                     LGVTLWELFNNAAQPYANLSDLDVLNQVIRERDMKLPKPQLELPYSERWYEVLQFCWL
                     SPDKRPAAEDVHRLLTYLRMQSQRDSEVDFEQQWTALKPNANSRDPSSSAAFPILDHF
                     ARDRLGREMEEVLTVTETSQGLSFEYVWEAAKHDHFDEQGRGHPDEALSYSSMFFPVE
                     VFENSLSDPGPGKQDGSGQEGPLRAPGVVPVFDAHNLSVGSDYYIQLEEKSSSSLGLE
                     YPPALLTTEVDNPEKGGTDAPHLTAFKTLVSEEPSAEEDFFQSSARPKEANSAEDSHA
                     ASIPGSPFNIFSDLDKADDLPSHQKIFDLMELNGVQADFKPAILSPSLDGPKDTCQSE
                     REKPHDQDPLCFPESPVHQDCFDPLSVQELSENFLFLQEKNLLKGSLPGKGRVNDLQT
                     ELKDAGFISEMLESPRRGSVSSGLELLEHTLDFPSSQENMSGQNKGTGGTPQGATSPQ
                     ASPLTEGSPNGPPDSVLKSGETKPFTGVSVPENSVCLDLSPDPVTGPVEIPAADAKAP
                     DGGDGPPEVTCQSKEALNPTKRDPILENEITAQGSMETCLPESGQDLQNQPFSEDPLS
                     GSILEKNSEAVETLNQLNYKAAPKDAALASALSSDSTSQDSLLEDSLSTPIPTSEQSV
                     ETPDSLDSVDVHAALLESLGSHTPQKLLPPDKPADSGYETENLESPEWTLHPAPEGTA
                     DSDTAAAGDSSHSSLPPNPVIVISDAGDGHRGAEGPPQSFSLGTQSSYRDSAYFSDND
                     SEPDKKPEEAPGTSASALVLVKDQLPPEPVAPEDSPDDVREGCLEASQSKPEQSPASA
                     LQNSCHSELQETLQPTPADQSPASALQNSCHSELQETLQPTPADQSPASALQNSCHSE
                     LQEMLQPTPADQSPASALQNSCHSELQETLQPTPADQSPASALQNSCHSELQETLQPT
                     PADQSPASALQNSCHSELQETLQPTPADQSPASALQNSCHSELQETLQPTPAGASRET
                     YPVDDEARGPLGLLNSEFSSCDDLETQEDRPCTLASTGTNTNELLAYTGSTLDKSLPS
                     HFEGPKLKEPDIEGKYLGKLCVSGMLDLSEDGMDADEEDENSDDSDEDLRAFNLHSLS
                     SESEDDMEHPVPIIVSNDDGRHLRSLLKPSAAAAIEQLPDDWKKEKKAVTFFDDVTVY
                     LFDQETPTKELGHCGGEAHGPGPSSPAASTGSPYLSRCMNSESSTDEEGGGFEWDDDF
                     SPDPFMSKTTSLLGSKPSLQTSKYFSPPPPARSSEQSWPHVSPCSRFSISPANIASFS
                     LTHLTDSDIEQGGSSEDGDKD"
ORIGIN      
        1 cgctctacgt cacatgacgc agcccatcat ggcggcggga gcgcggctgc ctgggcccgc
       61 ggctccgcag gctgggtgcc gttgctgctg ttgaggggcg gcggcggcgc agacgggcgg
      121 gaaggatgat gctggctctg tggccagagc ggcggatgca gaccgggaac agggttgacg
      181 tttggctaac gagacgtgtg tcccgaagca gccggcgccg gtgtcgctga ggcggcgcgg
      241 agggctgact gactgaaggc ggcaacccga gagccggccc cggcagggga ccgcgcggtg
      301 gacgaaatgc cgggaccacc ggcatcatcg ccgctgccga tgccgctgct gctgcttctg
      361 ctcttgaccg tcggcagtgc ccgggccgcg ccacttccgc aaacaggtgc aggggacgca
      421 cctgttgtag aagttccctc cttgtttgtg atcctgtcgg tgtgcagttt aatggtactg
      481 atagtgttaa ttgcaaactg tgtttcctgc tgtaaggacc cagaaataga ctttaaggaa
      541 tttgaagata attttgatga tgagatagac ttcacaccac cagcagaaga caccccctct
      601 gtccagtccc cagcagaggt cttcacactc tcagtgccaa acatttcact tccagcccca
      661 tcccagttcc agtcttctgt ggaaggtttg aagtctcagg tcgctcgcca cagtctaaac
      721 tatatacagg agattgggaa tggctggttt gggaaggtgc tcctgggaga gacttacaca
      781 ggcaccagcg tcacaagagt catagtgaag gagttaaaag tcagtgcaag cccaaaggaa
      841 caagatactt tcctgaacag tggagagcct tactacattc ttcagcatcc gaatgttctt
      901 cagtgtgtcg ggcagtgcgt ggaagccatt ccctaccttc tggtgtttga gttctgcgac
      961 ctgggtgacc tgaaggctta cctgcacaat gaacaagagc acgtgcgcag cgagtcacag
     1021 accatgctgc tgcagaggat ggcgtgcgag attgccgcag ggctggcagc catgcacaag
     1081 ctgcacttcc tgcacagtga tctggcccta cggaactgtt atctcacctc cgacctaaac
     1141 gtcaaagtgg gtgactatgg gataggcttc agcagataca aggaggatta catagagacg
     1201 gatgacaaaa aaattttccc cctgagatgg actgctccag aattagtgac cagctttcaa
     1261 gacagactct tgaccgcaga tcagactaag tacagtaaca tctggtcctt gggtgtaaca
     1321 ctttgggaac tcttcaacaa tgctgctcag ccctatgcaa acctttctga cctggacgtt
     1381 ctcaatcaag tcattagaga gagggacatg aaactcccca agccccagct ggaactgcct
     1441 tactcggaga gatggtatga agtgctgcag ttctgctggc tgtcccctga caagaggccg
     1501 gctgcagagg acgtgcaccg cctgctcacc tacctgcgga tgcagagcca gcgggactcg
     1561 gaggtggact tcgaacagca gtggactgct ctcaagccta acgccaacag cagggacccc
     1621 tcaagcagtg ctgccttccc catccttgac cactttgccc gggaccggct aggtcgggag
     1681 atggaggagg tcctcacagt gactgagacc agccagggcc tgagctttga gtacgtgtgg
     1741 gaggctgcca agcatgacca ttttgatgag caaggtcggg gccacccaga cgaagccttg
     1801 tcctattcca gtatgttctt ccctgttgaa gtgtttgaga attcactgtc agaccctggc
     1861 cctggcaagc aagacggcag tggccaggag gggcccctga gggctcctgg ggtggttcct
     1921 gtgtttgatg cacacaacct ctctgttgga agtgactact acatccagtt ggaagagaag
     1981 agcagtagca gtctggggct ggagtatccg cctgcactgc tcacaactga agtggataat
     2041 ccagaaaagg gtggaactga cgcaccccat ctcacggcct ttaagactct tgtgtctgag
     2101 gaacccagtg cagaggagga tttcttccag agcagtgctc gccccaaaga agccaactct
     2161 gcggaggact cacatgctgc cagcatccct gggagccctt tcaacatatt cagtgacctt
     2221 gacaaagcag acgacctgcc cagtcaccag aaaatatttg atctaatgga actaaatgga
     2281 gttcaagctg actttaagcc agccatcttg agtccaagcc tggatggccc caaagacacc
     2341 tgccagtctg aaagagaaaa gccccatgac caggaccctc tgtgcttccc agaaagtcct
     2401 gtgcaccaag attgctttga tccactgagt gtccaagaat tgtcagagaa cttcttattt
     2461 cttcaggaaa agaatctgct gaaaggctcg ttgcctggca aggggcgggt gaacgatctt
     2521 cagacagaac ttaaggacgc aggttttatc tctgaaatgt tagagtcacc ccggagaggc
     2581 tctgtaagtt ctggacttga gctcctggaa catacactag actttccctc atcacaggag
     2641 aacatgagtg ggcagaacaa aggcacaggt ggcacacctc agggtgcgac ctcaccacag
     2701 gcctccccgc tcacagaagg atctcctaat ggtcctccgg actcagttct gaagtcagga
     2761 gaaaccaaac cctttacagg tgtcagcgtc cctgagaact ccgtctgcct ggatctaagc
     2821 cccgaccctg tgactggccc agttgaaatt cctgctgccg atgccaaagc ccccgatggg
     2881 ggcgatgggc ctccagaagt cacttgccaa agcaaggagg ccttgaatcc aaccaaaaga
     2941 gaccccatcc ttgagaatga gattactgct cagggtagca tggagacttg tcttccagaa
     3001 tcaggtcagg atttacaaaa tcagccattt tcagaagacc ctcttagtgg cagcatactg
     3061 gagaaaaact cagaagccgt ggagacttta aatcagctta attataaggc tgccccaaag
     3121 gacgcggcct tggcatctgc cctctcctca gactccacca gccaagatag cctcctggaa
     3181 gacagtttgt caacgcccat ccccacctca gagcagtctg tggagacgcc agactccctg
     3241 gactcagtgg atgtccatgc agcattacta gagtccctag gctcccacac ccctcagaaa
     3301 ctcttgcccc ctgataagcc cgcagacagt ggctatgaaa cagagaacct ggagtccccc
     3361 gagtggaccc tgcaccctgc acctgagggc actgcggact cagacacagc tgcagcaggt
     3421 gatagcagcc acagcagttt gcctcccaac ccggtcatcg tcatctcaga tgcaggagat
     3481 ggccacaggg gtgctgaagg tccccctcag agcttctcac ttggcaccca gagttcatat
     3541 cgagactctg cgtacttctc agacaatgac tcagagccag ataaaaagcc tgaggaggcc
     3601 ccaggaacat ccgccagtgc cctggtattg gtaaaggacc agctcccacc tgagccagtt
     3661 gctccagaag acagccctga tgatgtcaga gaaggctgcc tggaagcctc acagagcaag
     3721 ccagagcaaa gtccggcgtc tgctttgcag aattcttgtc actcagaatt gcaagagacg
     3781 ttgcagccca caccagctga tcagagtccg gcgtctgctt tgcagaattc ttgtcactca
     3841 gaattgcaag agacgttgca gcccacacca gctgatcaga gtccggcgtc tgctttgcag
     3901 aattcttgtc actcagaatt gcaagagatg ttgcagccca caccagctga tcagagtccg
     3961 gcgtctgctt tgcagaattc ttgtcactca gaattgcaag agacgttgca gcccacacca
     4021 gctgatcaga gtccggcgtc tgctttgcag aattcttgtc actcagaatt gcaagagacg
     4081 ttgcagccca caccagctga tcagagtccg gcgtctgctt tgcagaattc ttgtcactca
     4141 gaattgcaag agacgttgca gcccacacca gctgatcaga gtccggcgtc tgctttgcag
     4201 aattcttgtc actcagaatt gcaagagacg ttgcagccca caccagccgg tgcttccaga
     4261 gagacgtacc ctgtggacga tgaggcccgc ggccccttgg gtttgttgaa ttcagaattt
     4321 agcagctgcg atgacctgga gacacaggaa gatcgcccat gcaccctggc ctccacaggc
     4381 accaacacca atgagctcct tgcatacaca ggctccacac tggataagtc tttgcccagc
     4441 cactttgagg gccccaagct gaaggagcca gacattgaag ggaaatacct gggcaaactg
     4501 tgtgtgtctg ggatgctgga cctctcggag gatgggatgg atgcagatga agaagatgag
     4561 aacagtgacg actcggacga ggacctgcgg gccttcaact tgcacagcct aagctcggag
     4621 tctgaagatg acatggagca ccctgtgccc atcattgtca gtaatgatga tggcaggcac
     4681 ctgcggagtt tgctgaaacc ctcggctgcc gcggccattg agcagctgcc agatgactgg
     4741 aagaaggaaa agaaggcggt gacatttttt gatgatgtca ccgtttatct ctttgaccag
     4801 gaaaccccca ccaaagagct ggggcactgc ggaggggaag cacatggccc tgggcccagc
     4861 agcccggcag catccacagg gtcaccctac ctaagcaggt gcatgaattc cgagagctcc
     4921 acggatgaag aaggcggagg cttcgaatgg gacgatgact tctccccaga tcctttcatg
     4981 tcaaaaacaa caagccttct gggttccaag ccttctcttc aaacttccaa atacttttct
     5041 cctccgccgc cggccaggag ctcagagcag agctggccac acgtgtcccc ctgctcccgg
     5101 ttctccatct ctcctgccaa cattgccagc ttctccctca cacacctcac ggactcagac
     5161 attgaacaag gaggcagcag tgaagatgga gacaaggact aggtggccgt ggacacgctc
     5221 tcctagccag cctcgctcct gcctgtgcac ctgagcaacg acatcgactc catgctgact
     5281 ggcaccagac agggaatgaa agctcaggag tgatggagaa ctgggccagc aagccagctc
     5341 cctctgccgc gctcgcctgg gccgctcctg actagatgtg ctctcgtgct gggcatcctg
     5401 ttgaggtggt cacactgcca cactgctctg gcacatgagt gttggaggac ctgtgcacct
     5461 caggccgtag gtctgtctgc tgtgtggatg tccacctcac cacacctgtg cctccagtct
     5521 gggcatggtg ccacagaagg gcgcaccagg ggaatgctca taagtgagcc atatttattg
     5581 tctttaagaa aatcactaat gctctttgac tgcactgtgg gtgagtgttc tgagctccca
     5641 gtattgtaga gcatcgtaaa ttatccgagg aaaagatggc gggccaagct ggtgctgtcc
     5701 actggtttga ttttctttct ttcttttttc tttttttcct gttttgtgcg tcgctctgca
     5761 tggtactgta agcttcaata tcttgagtgt ccttctgtct ccgcacctat gagacccgca
     5821 cacaggtact cttccccagg ccgctccgat tctgcgtgtt agtggtttat gtttttagag
     5881 gaaatatttt tgttgaggcc aaaactcctg ttccgttcca tcgattgcac cgtgcatgtt
     5941 tctgtataag gtgggttctc tgggcagcct gcctctcatg cttttaaatc ctttcggtag
     6001 aaatcctata agagatacac ccagaactca gtgcccaggg tccttttctg ctgaagtgag
     6061 gcaccacttc ctctgcacag agaccagcct ccaggagccc tgtgtccctc aggcaggggg
     6121 acctctgaga cagacactgg tccctacaga gctgcaagtg acaagagcag tttgtctact
     6181 ctgggtactg ctgggagaaa tgtttggaaa tgtctggggc gggttcttcc cattccaggc
     6241 tatagcaccc aggatgcagg cagcctgctg tagctgcaag gaggagggca gggaccccag
     6301 cagggcctcc agccaccccg tggcccccct cctgtatcaa gcacccagcc ctcctctttt
     6361 tctgaaaggg atctcacatc ttcagcatag cctcagtata tcttcggagg aatctgctgt
     6421 ccccaacaca agagcgaggc ctcactctgc agccctggag ttctgctttg acagaggaag
     6481 tgttggtagc cagcatggca gggaactgca cctgctgggg tgggtcttct cacttgggct
     6541 cctcacccca aatgcttccc ggtgctgacc ccgctaccca gactccagtg tgaccatggg
     6601 aggagtctcc aggccctggc caggacattg tgctgtccat cagagtacag gtgtgaatgt
     6661 cagcttgagt ttacgtagca attatgacct ttattaccaa ctctgattcg atccatgaat
     6721 tttttatact aagcaataac tttaacgatc agcagaagga atttgagaac agagtctcct
     6781 cttcccatac ttggtgcaga cctagcctgc ctggactccg tagaaagcac tggatcttgt
     6841 gacatgtgta ttcaaaacag gcatttgaaa gtgactttgc caaaattgtc ataactgaac
     6901 ttttgctctg tggactttct gattttgttt ttaattttta cctctatcta ccagtcttag
     6961 ttgagaaaga aaggagacat aattataata agtttttgtt tcaaattcta ggtttaagaa
     7021 gtgcagattc cctgattaca gtcaggtgga ctcgtatata tttatagtct ctccgcagcc
     7081 agcctgggac agaccgactg acatttgagg gctggccgtc tttcaccatg ctaaagggat
     7141 tttaacaata catcccattt ctatttatcc atatcgctct catggttcat tgccaaaacg
     7201 aaagcatttt atgtattgag ttgaggttgg gatggggtgg ctctttctgt ggcgtcgcat
     7261 gggagggaag actttgtata acactcggtc gtcaacacat cctcccccaa tctccagcaa
     7321 tatacagaaa tttcagtaga ctaaactcag cccggtttta aatgtgagca tgcgctttgc
     7381 catccaatgt gggttttgct ttggcttagg ttttggtttt tgatttttaa gacagggttt
     7441 ctctgtgtag ccctggctgt cctggaactc actctgtaga ccaggctggc ctcgaactca
     7501 agagatccac ctgcctctgc cccctgagtg cagcctccat acccagctgg ttttattttt
     7561 taatgataac ttggttggtt ttggggggct ttccaaacct ggtcactcat gtaagcgatg
     7621 aaacgagcca gtggcacctg tggctggcgt gcgatgggct cagtgacttt tctttctgca
     7681 ctctgcctca tcctccacct accagactgg aaactgactt ttaatcctct aataaaaaca
     7741 atgagccctc caagtccttc tttgatatct tctgtttgtt ataagtcaga aagaagtagt
     7801 tctcccccga gactcagact ctgtctgggc cagaagccat tcatcggggt tgcaatggca
     7861 agcagcctcc ctccttttcc ccacatacag gcttggtttt caggagatgg gtttctctaa
     7921 ggaagtctgt ctctctgctg taaaatgcct tttgaaaccg tccctctttt tcatacttcc
     7981 catagggcat ttgtagaatt agtgacctac tgcatgtctg tccccaggac ggggaaagac
     8041 aggcagctcc tcagcctcct cccacccctc agcctgaaaa ctcaggtgca accaagtgtt
     8101 cggctctgtg cgcctcgctt cagagcatcc cgcttgagag gagccacctt ctagtaagag
     8161 tgggcagaca cgggtacgtg cgtcaaacat acatctcaat atttctcaag cagcaaacgg
     8221 gggtcgcagt cttggctctt aggaaactac ttaacttcca cagacgttct taagatgtgt
     8281 cgacagtatt gcgtcacccg ctgctgtccc gggcttgaac agacggtgtt tggtttgcct
     8341 gcataggcaa agctgggtct tggtgactgg acttgtgcat gtgcccactg tttcgtcccg
     8401 tccacggcca gggatctggg cagggcagtc acacccatag cccggcacct acgaggttgt
     8461 acttaacaca atcagatggg gttcacggca atataacagt taatgaactt ggagtttaaa
     8521 ttgtgtacat ttttaaattg taagattttt actgtatatt gaagcttagt gtgattcaat
     8581 aaattgcttg taatttaaaa actatttaat attcaaaata aatatagtta tatatttata
     8641 ataa
//
