LOCUS       XM_006236972            2249 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus leiomodin 3 (Lmod3), transcript
            variant X1, mRNA.
ACCESSION   XM_006236972
VERSION     XM_006236972.4
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006236972.5.
            
            On Jan 21, 2021 this sequence version replaced XM_006236972.3.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2249
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2249
                     /gene="Lmod3"
                     /note="leiomodin 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 14 ESTs, 3 long SRA
                     reads, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 7 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:500267"
                     /db_xref="RGD:1564924"
     CDS             178..1914
                     /gene="Lmod3"
                     /codon_start=1
                     /product="leiomodin-3"
                     /protein_id="XP_006237034.1"
                     /db_xref="GeneID:500267"
                     /db_xref="RGD:1564924"
                     /translation="MSEHSGNSDQEDTLSEELDEDEILANLSPEELKELQSEMEVMAP
                     DPHLPVGMIQKDQTDKAPTGNFDHKSLVDYMYLQKASRRMLEDERVPVSFVQSEENTQ
                     KQHEVREKGIASMPQFLKEKLNSEILAKKRQSNGSNNVQETEDDEDEEDEEDEEDDED
                     EDEGEEGDEDEEDGDGEQANRGKNEAKEQVHNNASICQQPATRAMEEQKATRAMEEQK
                     DTAETKGKGAKKIAKLDPKKLALDTSFLKVSARPSGNQTDLDGSLRRVRQNDPDMKEL
                     NLNNIENIPKEMLLDFVNAMKKNKHIKSFSLANVGADESVAFALANMLRENRSITTLN
                     IESNFITGKGIVAIMRCLQFNETLTELRFHNQRHMLGHHAEMEISRLLKANNTLLKMG
                     YHFELPGPRMVVTNLLTRNQDKRRQKRQEEQQQQQLKEQRKLIAMLENGLGLPPGMWE
                     RLGGPMPDPRMQEFFQPSPGRSLAAQEVPFGARKEMIKNPPQPPQYKTDPDSFRVVKL
                     KRIQRKSRMPEARESQEKTNLKDVIKTLKPVPRNRPPPLVEITPRDQLLNDIRHSNVA
                     YLKPVQLPKELA"
ORIGIN      
        1 taccacagca agacctgagc tgttcccttc agtggcacgg ttaccagaac ctgctggaga
       61 gaaccggcaa agcccagctc accttctacc tacaagggac gcttctgttc caggagaaac
      121 tgcatttgct ggctggattt tcactctgag gttttaaaca gatagaaaaa gccaacgatg
      181 tcggagcaca gtgggaactc agatcaagaa gacaccctta gtgaggagct tgatgaagat
      241 gagatcttgg ccaacttatc ccctgaagag ctgaaggaac tgcagtccga gatggaagtc
      301 atggcccctg acccccacct tcctgtgggg atgatccaga aggatcaaac tgacaaggct
      361 cccacaggaa actttgacca taagtctctc gtcgattaca tgtatttgca aaaggcgtct
      421 agacgcatgc tggaagatga acgagttcct gtcagttttg tgcagtctga ggaaaatact
      481 caaaaacagc acgaagtaag agagaaaggc attgcaagca tgccccagtt tttaaaagaa
      541 aagctcaaca gtgaaatcct tgcaaagaaa agacaatcaa atgggagcaa caatgtacaa
      601 gaaacagaag atgacgaaga tgaggaggat gaagaagatg aagaggatga tgaagatgag
      661 gatgagggtg aagagggtga tgaagatgaa gaggatggag atggtgaaca agccaacaga
      721 ggaaaaaatg aagcaaagga acaagtccac aataatgcca gcatctgcca gcagccggct
      781 actagagcaa tggaagagca aaaggctact agagcaatgg aagagcaaaa ggacacggca
      841 gagaccaaag gaaaaggtgc gaagaaaata gccaaattag accctaagaa gttagctctt
      901 gataccagtt ttctgaaggt aagtgcaagg ccttcaggga accagacaga cctggacgga
      961 agcttgagac gagtgagaca gaacgaccct gacatgaagg aactcaacct gaacaacatc
     1021 gaaaacatcc ctaaagaaat gttgctggac tttgtcaatg caatgaagaa aaacaaacac
     1081 atcaaaagct tcagtttagc caacgtcggt gcagatgaga gtgtagcatt cgccttggct
     1141 aacatgctac gtgaaaacag gagcatcacc accctcaata ttgagtccaa ctttatcacc
     1201 gggaagggca ttgtggccat catgaggtgc ctccagttca acgaaactct gactgaactt
     1261 cggtttcaca accagaggca tatgctgggc caccacgccg aaatggaaat atcaaggctt
     1321 ctgaaggcca acaacaccct gttgaagatg ggctaccatt tcgagcttcc gggtcccaga
     1381 atggtggtaa ccaatctgct taccaggaac caggataaac ggagacagaa aagacaggag
     1441 gagcagcagc agcagcaact taaagagcag agaaagctga tagccatgtt ggagaacggg
     1501 ttggggctgc cccctgggat gtgggagagg ctgggaggac ccatgcccga tcccagaatg
     1561 caagaattct tccagccttc acctgggcgg tcccttgctg ctcaagaagt ccccttcggt
     1621 gcaagaaagg aaatgatcaa aaatccgcct caacccccac agtacaagac agacccggac
     1681 tccttcaggg tggtgaagct gaagagaatt caacgcaaat ctcgaatgcc ggaagccaga
     1741 gagtcgcagg agaaaaccaa cctcaaagat gtaatcaaaa cgctcaagcc agtgccgaga
     1801 aataggccgc ccccgctggt ggaaatcact cccagagacc agctcttgaa tgacatccga
     1861 cacagcaatg ttgcctacct aaaacctgtg caactgccaa aagaattggc ataggaggca
     1921 gcagaatcat ctagaacagc aagatcagag ctggaggctg tttcactaac agtgcagagg
     1981 acagaactgc gattgaccaa tggtggctcg ctccaaccag gctggggatg gtttgggctg
     2041 tgagaagaca aaggcccaag aggaagggaa ggatacagaa tatcgatgtt cacagacaac
     2101 acattcttct tctcagagtt ggactgcctt gggtgaaaat tgtagcgcgg tgctcctaga
     2161 agcagaagct aaccccttct tggtaaacac tttactattg ttttctccta gtgattaaca
     2221 ataaataacg gtggaagtgt taactgtca
//
