LOCUS       NM_001399648            2314 bp    mRNA    linear   ROD 29-MAR-2024
DEFINITION  Rattus norvegicus LIM domain only 3 (Lmo3), mRNA.
ACCESSION   NM_001399648 XM_003749863
VERSION     NM_001399648.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2314)
  AUTHORS   Lindroos,J., Husa,J., Mitterer,G., Haschemi,A., Rauscher,S.,
            Haas,R., Groger,M., Loewe,R., Kohrgruber,N., Schrogendorfer,K.F.,
            Prager,G., Beck,H., Pospisilik,J.A., Zeyda,M., Stulnig,T.M.,
            Patsch,W., Wagner,O., Esterbauer,H. and Bilban,M.
  TITLE     Human but not mouse adipogenesis is critically dependent on LMO3
  JOURNAL   Cell Metab 18 (1), 62-74 (2013)
   PUBMED   23823477
REFERENCE   2  (bases 1 to 2314)
  AUTHORS   Susa,T., Ishikawa,A., Cai,L.Y., Kato,T., Matsumoto,K., Kitahara,K.,
            Kurokawa,R., Ono,T. and Kato,Y.
  TITLE     The highly related LIM factors, LMO1, LMO3 and LMO4, play different
            roles in the regulation of the pituitary glycoprotein hormone
            alpha-subunit (alpha GSU) gene
  JOURNAL   Biosci Rep 30 (1), 51-58 (2009)
   PUBMED   19228115
  REMARK    Publication Status: Online-Only
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Jan 12, 2022 this sequence version replaced XM_003749863.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.18338.1,
                                           SRR26643288.20980.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760393,
                                           SAMEA5760433 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-425               JAXUCZ010000004.1  173024732-173025156 c
            426-639             JAXUCZ010000004.1  173019201-173019414 c
            640-765             JAXUCZ010000004.1  172978617-172978742 c
            766-2314            JAXUCZ010000004.1  172965951-172967499 c
FEATURES             Location/Qualifiers
     source          1..2314
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q44"
     gene            1..2314
                     /gene="Lmo3"
                     /gene_synonym="RGD1561357"
                     /note="LIM domain only 3"
                     /db_xref="GeneID:497798"
                     /db_xref="RGD:1561357"
     exon            1..425
                     /gene="Lmo3"
                     /gene_synonym="RGD1561357"
                     /inference="alignment:Splign:2.1.0"
     exon            426..639
                     /gene="Lmo3"
                     /gene_synonym="RGD1561357"
                     /inference="alignment:Splign:2.1.0"
     CDS             434..871
                     /gene="Lmo3"
                     /gene_synonym="RGD1561357"
                     /codon_start=1
                     /product="LIM domain only protein 3"
                     /protein_id="NP_001386577.1"
                     /db_xref="GeneID:497798"
                     /db_xref="RGD:1561357"
                     /translation="MLSVQPDTKPKGCAGCNRKIKDRYLLKALDKYWHEDCLKCACCD
                     CRLGEVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEMVMRAKDNVYHLDC
                     FACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR"
     exon            640..765
                     /gene="Lmo3"
                     /gene_synonym="RGD1561357"
                     /inference="alignment:Splign:2.1.0"
     exon            766..2314
                     /gene="Lmo3"
                     /gene_synonym="RGD1561357"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctccactgtg gttctgacag gcgctgcctg ggctccaagg cgctgtaata actgggtgac
       61 cttttcttgg gctgtattat gtctggctgg gaagggattg cattttgcgg ctgagagcca
      121 gggcttcctt cagctcgggc tcctcgcacg ctgctggggt aagttgtcag gagccaggac
      181 caagagagac atcccccgga ctgcagttgc ctaaaagaag gacacctgtg gctcgcatgc
      241 ggtccacact ggtacttggc ggatcctgga ggacctcatt attttaaact taaaaaaaaa
      301 atagagattc tacccccccg ttttttttca aacaatgttt ctttttgacc tttcccaagg
      361 agaagcgcta ccaagcagcc gctgtgctca ctgaacaccc tcccctgtat tgcttaattg
      421 agaaggcata caaatgctct cagttcagcc agacaccaag ccgaaaggtt gtgctggctg
      481 caaccgcaaa atcaaggacc ggtatctcct aaaggcgctg gacaaatatt ggcatgagga
      541 ctgcctgaag tgtgcctgct gtgactgccg tttgggagag gtgggctcca ccctgtacac
      601 taaagcgaac cttatccttt gtcgcagaga ctacctgagg ctgtttggtg tgactggaaa
      661 ctgcgctgcc tgcagcaagc tcatccccgc ctttgagatg gtgatgcgtg ccaaggataa
      721 tgtgtaccac ctggactgct tcgcctgtca gctctgcaac cagagatttt gtgtcggaga
      781 caaatttttc ttaaagaaca atatgattct ctgccagaca gactacgagg aaggcctaat
      841 gaaagaaggt tacgcacccc aggtccgctg atcccgcaac atcaccccta acaacgcaaa
      901 gcactccatc cttttatccg ttgtgctcac gtgtatataa gaaccgacac aggaacctac
      961 aaaatagggt agcgatagag cggcagaatg gccgtgtgga agagaaggcg gactgcatct
     1021 gtatgtagtg aaatggcccc agtccaagag ttgaatgttc attattaaag agagagaaag
     1081 gaatgtatat attgcgggat ttttttgctt gcttatttgt ttctgtgtca cttggcatga
     1141 gatgtttatt ttggactact gtatataacg tattgtaaat ccgaagcaca aatgtaatac
     1201 agttttattg tgttaccatt tgtgtttggt ttgcttcttt gtaatgttgc atttggtaca
     1261 atcagtgtct aaacttaccg tacgcttatg ctttctgtgt ctaccagcta ctttcgacgg
     1321 gctgtacctt tctagtcaga cctgaggagc aagcctcaag ggtgacacac agaggaagca
     1381 agcctatcaa cgttagagag acagaaataa atgactagac acacagcagt cagtgacatc
     1441 cgcttcttac ggctactaca ctttgctgta tccgtgttct catcagaacc ccctattttc
     1501 agggggctaa agatcagctt taaaaaaaaa tgataacgat ttcatcttaa agcactttca
     1561 ttttatgcca acgtgaaaag tgccattttt agtgacttta aagcttagcg atgccccttc
     1621 gatatccttt actgtgcccc tttccttcgc tagagattta ctacgttttc ttttccccgg
     1681 tcacacaccc tacgtgaact agtgcctttg ggtagcatgt aaacaatttc caaagggtta
     1741 ttctaaatga gaaaggtatt accacgatta tgacataata taaacaattt tcaacaatct
     1801 cgtataagtg ttgtccagat ttctccctag gagacaaggg ctttgtgtct atctatggtc
     1861 agtgatctga cggcccagaa cagacttgag ggtgtacctc ctgaaatcgg gatactgcac
     1921 actgagatcc taatggccga gtcacacggg gatctgctca cagcctcgga actgttggta
     1981 cagaagcaga gaagaagttg agaactgcct ggtgattgtg tattctgcct ggcatttact
     2041 ctcatcttta aaacactttg aatttgctat gtcacacttt ctcggcccct cgcgttcacc
     2101 gccatcttcc aactcagatt atgtaacact tgggctaaaa tctatccacc ttttttttta
     2161 aaaattatat taattattgt tttgttttga tttttaatgg tgaagtgttc ccccttattt
     2221 aaatgatagc tgatgaagaa gaatgttcta gaaacagaaa ctgtgggaaa tgattactta
     2281 cattgcaatt aaggaaataa aaccaagaat atgg
//
