LOCUS       NM_001419517            2340 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus lamin tail domain containing 1 (Lmntd1), mRNA.
ACCESSION   NM_001419517 XM_008763419
VERSION     NM_001419517.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2340)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000004.1.
            
            On Apr 6, 2023 this sequence version replaced XM_008763419.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643293.26002.1,
                                           SRR26360181.1249005.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-189               JAXUCZ010000004.1  180127194-180127382 c
            190-299             JAXUCZ010000004.1  180127006-180127115 c
            300-556             JAXUCZ010000004.1  180123136-180123392 c
            557-761             JAXUCZ010000004.1  180119955-180120159 c
            762-948             JAXUCZ010000004.1  180111782-180111968 c
            949-1068            JAXUCZ010000004.1  180105027-180105146 c
            1069-1274           JAXUCZ010000004.1  180100137-180100342 c
            1275-1447           JAXUCZ010000004.1  180099134-180099306 c
            1448-1505           JAXUCZ010000004.1  180093113-180093170 c
            1506-2340           JAXUCZ010000004.1  180085134-180085968 c
FEATURES             Location/Qualifiers
     source          1..2340
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q44"
     gene            1..2340
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /note="lamin tail domain containing 1"
                     /db_xref="GeneID:500362"
                     /db_xref="RGD:1560077"
     exon            1..189
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            190..299
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     CDS             220..1476
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /note="intermediate filament tail domain-containing
                     protein 1; intermediate filament tail domain containing 1;
                     intermediate filament tail domain-containing protein
                     1-like; lamin tail domain-containing protein 1-like"
                     /codon_start=1
                     /product="lamin tail domain-containing protein 1"
                     /protein_id="NP_001406446.1"
                     /db_xref="GeneID:500362"
                     /db_xref="RGD:1560077"
                     /translation="MKEDASEPPTRDTDISPQEVKMQEEEMKEEKTGTITPSKQHSSV
                     HFFPKVMDSSSTLHLLSGSFSHEASANFHQIPSAQDSLSPGGLLTSKSNVPSCSRKDS
                     IPGKQSTHQAASPGTSLMTLKKQPKPSSDLDTYVLGDGEDYFLSLFGDSKKLTSHTSQ
                     AEDVSKHLSVILEEVGQFVSSSLGDIKIAEVNVKGFFVRLVNSSNEKEVEIGNYILQQ
                     NVNGQAVSLYRFPHNITMQASGTVTVWAAASEAKPQQPTDFVWEEQSRFRSSPDCTTI
                     LCKPSGEAIAWYTPIHWKQAWEKLETDIEFERCSVVIPSLKSHIFGRTTSSVSSINKE
                     KQEPTQKTPPQVCSVLLREKEILLTVLPNKSPWCRSPDTPPHPYSSLIEWHDSDFPGS
                     SLGTQPKPQSTKPKPDPGTKEKKSTR"
     exon            300..556
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            557..761
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            762..948
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            949..1068
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            1069..1274
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1447
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            1448..1505
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
     exon            1506..2340
                     /gene="Lmntd1"
                     /gene_synonym="Ifltd1; RGD1560077"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agaagtgagg tcgttgtcac aatggctgag ctgctcgccg tggtccctct gtggtttgtc
       61 tcagagtctt tgctcacaga agcagtgcct gtatcgactc tgacatttct catggagatg
      121 gtctccttag taccagtgtg acaaaggact cactaaattt gataaactga agacagttgg
      181 agtaagcagg aaagagaaga ggcgcccttg ccaaccaaga tgaaggaaga cgcttcggag
      241 cctccaacca gagacactga catcagtcca caagaagtta aaatgcagga ggaagagatg
      301 aaggaagaaa aaactggaac catcactcca tcgaaacagc attcatcagt ccattttttc
      361 ccaaaggtaa tggactcgag ctccacactc cacctactgt caggctcatt ttcccatgag
      421 gcgtcggcca acttccacca gatccccagt gctcaagaca gcttatcgcc cggaggactg
      481 ctgacttcta aatccaatgt cccaagctgc tcccgcaaag acagcatccc ggggaaacag
      541 agtacacacc aagcagcttc tcctggcaca agcctcatga ctctaaagaa gcagccgaaa
      601 ccgagctccg acttggatac ctacgttctg ggggatggtg aggattattt cctttccttg
      661 tttggagact cgaagaagct cacatcgcat acatcccaag cggaggacgt gagcaaacac
      721 ctttctgtga ttcttgagga agtcggccag tttgtatcaa gttctcttgg agacattaaa
      781 atagctgagg taaatgtcaa gggtttcttt gtgaggcttg ttaactcctc caatgaaaag
      841 gaagtagaga ttggaaacta catcctccag caaaacgtga acggacaggc agtctccttg
      901 taccgattcc ctcacaacat cacaatgcag gccagtggca cggtgaccgt gtgggcagca
      961 gcttcagagg caaagccaca gcagccaacg gacttcgttt gggaggaaca gagcaggttc
     1021 cgatccagtc cggactgcac gaccatcttg tgcaagccca gcggtgaggc catcgcctgg
     1081 tacaccccca tccactggaa gcaagcctgg gagaagctgg agactgacat tgagtttgaa
     1141 agatgctcag tggtgatccc atcgctgaaa agccacatat ttggacggac aacatcatct
     1201 gtgtcttcca taaataagga aaaacaagaa cccacacaga aaacgccccc ccaagtctgc
     1261 tctgttctct tgagagaaaa ggaaatcctg ctaactgttt tacccaataa gagtccttgg
     1321 tgccgcagcc ccgacacccc tccacatccc tacagctctc tgattgaatg gcatgactca
     1381 gactttcctg gaagcagttt gggtacacag cccaagcctc agtcaaccaa gcccaaacca
     1441 gacccaggga ccaaggaaaa gaaatcaact cgataagaaa atggaaaacc atggaatctg
     1501 tgaacccccc agagcaacgc atcagcttcc actgctcttc agtctccgcc tcgctgtctg
     1561 ttcgccacaa tgttgccttc ggctgcctgt gctggtcctg tctgcccagc ttctccctta
     1621 ctgcatcatg gtttactgtg tgggaagcgt gaaggagtct gcgtgctggg ctctgctctg
     1681 agctggtgaa agacattagc ataatgccag ggagtgtcga caatttctca tccgcagagg
     1741 caatcagagc ccaggcagtc tcctgaccag atattacaga ggcctcagcc tatcccagga
     1801 gggaaaacaa agcttgctcc tgtctattgc atttaaatga gttagctgtt cctataggcc
     1861 gccctttccc aagatgaacc accatcattt tcctgtggac tatgtctgtc tgctctctat
     1921 tcagaggcag tcagttgttt gtccctctgg ggcaaatatc cccgccccac atcccttgcc
     1981 cccttctccc tagtctcctg tttctgtctc ttaccccctg ccccttgtct tgtgtgcctt
     2041 cgggatacac ctcagacatt ttaaggaaaa gctcatgtgg tgccaacgtg aagggaacga
     2101 gagatcagga ctttgagaaa ccattgagta aactggtgac ctgtccgaga agcactctga
     2161 tgttcatgtt caaagcccag cataagtgat aagcttgtgt aaaatggcta ccgccttatg
     2221 aactgaggag gtcttcatag cgccacatct tcattaaagc tgttccctaa acgtgcacgt
     2281 gctgcacacg tgaatcagtg gagaacacgg ctgattaaag gctggctaaa gcggaaactg
//
