LOCUS       NM_001395134            3548 bp    mRNA    linear   ROD 17-FEB-2024
DEFINITION  Rattus norvegicus limb and CNS expressed 1 like (Lix1l), mRNA.
ACCESSION   NM_001395134 XM_006232978
VERSION     NM_001395134.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3548)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000076.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001395134.2.
            
            On Jun 4, 2021 this sequence version replaced XM_006232978.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: CO406177.1, BU670794.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-367               JACYVU010000076.1  2339092-2339458
            368-531             JACYVU010000076.1  2352301-2352464
            532-672             JACYVU010000076.1  2357482-2357622
            673-768             JACYVU010000076.1  2359923-2360018
            769-846             JACYVU010000076.1  2360762-2360839
            847-3548            JACYVU010000076.1  2362271-2364972
FEATURES             Location/Qualifiers
     source          1..3548
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..3548
                     /gene="Lix1l"
                     /note="limb and CNS expressed 1 like"
                     /db_xref="GeneID:499677"
                     /db_xref="RGD:1593161"
     exon            1..367
                     /gene="Lix1l"
                     /inference="alignment:Splign:2.1.0"
     CDS             76..1089
                     /gene="Lix1l"
                     /note="Lix1 homolog-like"
                     /codon_start=1
                     /product="LIX1-like protein"
                     /protein_id="NP_001382063.1"
                     /db_xref="GeneID:499677"
                     /db_xref="RGD:1593161"
                     /translation="METMRAQRLQPGVGVGGRGTLRALRPGVTGAPTSAATPPAGPPP
                     APPPPAPPPPPLLLAGAPGLPLPPGATGSPAVLREAVEAVVRSFAKHTQGYGRVNVVE
                     ALQEFWQMKQSRGADLKNGALVVYEMVPSNSPPYVCYVTLPGGSCFGSFQFCPTKAEA
                     RRSAAKIALMNSVFNEHPSRRITDEFIEKSVSEALASFNGNREEADNPNTGIGAFRFM
                     LESNKGKSMLEFQELMTVFQLLHWNGSLKAMRERQCSRQEVLAHYSHRALDDDIRHQM
                     ALDWVSREQSVPGALSRELASTERELDEARLAGKELRFHKEKKDILMLAAGQLGNMHS
                     SSC"
     exon            368..531
                     /gene="Lix1l"
                     /inference="alignment:Splign:2.1.0"
     exon            532..672
                     /gene="Lix1l"
                     /inference="alignment:Splign:2.1.0"
     exon            673..768
                     /gene="Lix1l"
                     /inference="alignment:Splign:2.1.0"
     exon            769..846
                     /gene="Lix1l"
                     /inference="alignment:Splign:2.1.0"
     exon            847..3548
                     /gene="Lix1l"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgctcactgg ggtggctggg accgttagct cgccaggctg gcaggctccg gggcccagct
       61 ccgccagccg ccgggatgga gactatgcga gcacagcggc tgcagcccgg cgtaggtgtc
      121 ggcgggagag gcactctacg agcactgagg ccgggggtga ccggggcccc aactagcgcc
      181 gccacacccc ccgcaggccc gccgcccgcc ccaccgcccc ccgccccgcc cccgccgcca
      241 ctgcttctgg ctggggcccc cgggctgccc ctgccccccg gcgctacggg gagcccggcg
      301 gtgctgcgcg aggcggtgga ggcggtggtg aggagcttcg ccaagcacac gcagggctat
      361 ggtcgagtga acgtggtgga ggcccttcag gaattctggc agatgaagca gtctcggggc
      421 gctgacctga agaacggggc tctggtggtg tacgagatgg tcccctccaa cagccctccc
      481 tacgtctgct atgttactct gcctgggggg agttgcttcg ggagtttcca gttttgcccc
      541 acaaaagctg aggcccggcg aagtgctgca aagattgcat taatgaactc cgtgtttaat
      601 gagcatccat cccgaagaat tactgatgaa tttattgaga agagtgtctc agaggccctg
      661 gcatctttca atggtaacag agaggaagcc gacaacccaa acacggggat tggtgccttc
      721 cgattcatgc tggaatctaa caagggcaag tcaatgctgg aattccagga gctgatgaca
      781 gtttttcagc tgttgcactg gaatggcagc cttaaggcca tgagagaaag acagtgctct
      841 cgacaggagg tgttggctca ttattcacat cgggccttag atgatgacat tcgccaccaa
      901 atggctttgg actgggtgag ccgggagcag agtgtgccag gggcactgtc aagagagctg
      961 gcttccactg aacgggagct cgatgaagcc aggctggcgg gcaaggagtt gcgcttccac
     1021 aaggagaaga aagacattct catgctggct gctgggcagt tgggcaatat gcattcttcc
     1081 agctgttaag cacctgccct ctactcgcca gggctcttca ggcccttttt tgtatgtctc
     1141 ctttttaaga cgtaggatga tgatttctgt atatactttc tcaattttat actttaaaat
     1201 agagatatat atgtataaat tctacacctg gcttcctatt tgctaagaga tccattttct
     1261 aacttccact ttggggatta gttacctttg aaatctcagt gttctatttt agagcacagt
     1321 tggctcttaa accttcagat tatctaagtc attaacatgt acaatttact aagtgttcct
     1381 gtctctttaa agagctatga tctctgcact caggagtctg aggcagtatt gctgtgaata
     1441 tgaggccagc ctggtctaca tagtaagttc caggtcagca tgggctgcag tgtataagat
     1501 cctgtctcag acccctcacc tcccacatag aagtcacagt gggaacaggg agcctgtgct
     1561 cacctccccc atattcttgg tttctctcca ctaaaatagg gtgggagtgt caggttttgg
     1621 ttagcagcga ccttccgatg tacctctcct gctcactttc ctttttcctt gcctctaagt
     1681 gctccttcat atgggggctt ccctacctta tcctgaagga gacctgcttc cttttgttct
     1741 gtgggacatt ttatcacagc ctggaactca tcctatagac taggaggatg gcatacttgt
     1801 gggtgtaggc tgctgagatc acaggcatgg gacaccaggc ctgacctggt tcttatttta
     1861 aagtcactct gagaaactgc ctaagaacaa gagagttggg gttggggatt tagctcagga
     1921 agcgcaaggc cctgggttcg gtccccagct ccgaaaaaaa gaaccaaaaa aaaaaaaaaa
     1981 aacagaacaa gagagttaca cacccagttc atatggtggt gggtagctgg gactacctaa
     2041 gctgcccctg ggctcatcta cccctactag cagtctagat ttctggatgt gagaagaggg
     2101 taagggttga ggctgcttgc cttccaccgt tccctggagt caccagtctt actcaccaga
     2161 cttaataaag acacactcac acatacgtgt acatacatac acacacacac acacacacac
     2221 tcacacgctt tttccatttt gtttatgtag cccaggctgg cctccaactc tcctggtagt
     2281 tgagaatgac ctgaactgca gacttcctct gtcagcctcc tacatgctag ggtttcagtg
     2341 aataccacct cagctgcctc aatccttcct ttcaggacaa gacgcttctt gttctttaga
     2401 aactgtagct attctgttta gagagaacca tgtccctctc ttgtctactg agctatgctg
     2461 tttactctga aatgtacaca ccttgcattc tcaattcctg cttcttcctt ctcctctaca
     2521 ctgactgtga gaacaggggt agtgaagctt ggattcgaag gtggctcttc ttaagcacaa
     2581 cagattactt gtgtgtgaag agaaaactaa cctggaggat aggcagggag aattttatgt
     2641 agtaagctca atcttccttt ctgtggtctc tgctatattg tattattgtt cagtgcactt
     2701 tctatcaagt tgggacagtt aatgccacta taattcgact tcccatttaa cagttgcagt
     2761 ttgattttag attaggagtt gggtctggtg gtgcaggtct gtaatctcag ctataaagga
     2821 ggctaaggca aaattggaaa ttcaaggtct accccagcta gagtgagctg aggggcaacc
     2881 tgagtaactt tgcaagactg tctcaaaaaa catgaaataa aaacagggtt ggggacatag
     2941 cttagtggaa gagagtctgc ctggcatgtg aggcctgggt ttaatcccta ctgcaaaaag
     3001 ggtaggggag tgagaggttt ggcaggaaga gagaggggag catggttaga tcagttagct
     3061 cactgggtag gaacaaggtg aaaagcagct ttcttacttt taaaatcatc tttgtgacaa
     3121 ggacacatgg gatcagagta gggtgtccag ttagattggt gtcagtgctt ggagaagggt
     3181 tctttgattc ctttagttag ccctgtctct ttgtttcata aaacacactg ggttggaaca
     3241 gaggctcctg agttacatga tatgggtgac ttttaaattg atatttataa cctagacacc
     3301 gtgaatcctc cagtttctcc tgggctcctt tttttgtgta agatgtgtta agggttatag
     3361 tttggggaag aattgtcctt gtacctcctg gaattattgt ttttctcaaa aacccaagac
     3421 tccaaagaac atgagaaaaa ttgttctgtc cacttttgat gttgaagatt ttagttatcc
     3481 ttttggtaca ttctatgtat tttctatgta aaattttaca caattaaaat gatttttttg
     3541 tctattaa
//
