LOCUS       NM_001106214            1522 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus limb and CNS expressed 1 (Lix1), mRNA.
ACCESSION   NM_001106214 XM_001053886 XM_214775
VERSION     NM_001106214.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474033.2.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001053886.1, XM_214775.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ076633.1, FQ087948.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q12"
     gene            1..1522
                     /gene="Lix1"
                     /note="limb and CNS expressed 1"
                     /db_xref="GeneID:292381"
                     /db_xref="RGD:1309454"
     exon            1..515
                     /gene="Lix1"
                     /inference="alignment:Splign:2.1.0"
     CDS             434..1282
                     /gene="Lix1"
                     /note="limb expression 1 homolog; Lix1 homolog"
                     /codon_start=1
                     /product="protein limb expression 1 homolog"
                     /protein_id="NP_001099684.1"
                     /db_xref="GeneID:292381"
                     /db_xref="RGD:1309454"
                     /translation="MDRTLESLRHIIAQALPHRDPALVFKDLNVVSMLQEFWESKQQQ
                     RATFSSEGLVVYESMPSSGPPFVSYVTLPGGSCFGNFQCCLSRAEARRDAAKVALINS
                     LFNELPSRRITKEFIMESVQEAVASTRGTLDDADDPSTSVGAYHYMLESNMGKTMLEF
                     QELMTIFQLLHWNGSLKALRETKCSRQEVISYYSQYSLDEKMRSHMALDWIMKERESP
                     GILSQELRAALGQLEEARKAGQELRFYKEKKEILSLALTQIYCDPDPSSPSDDQLSLT
                     ALCGYH"
     exon            516..679
                     /gene="Lix1"
                     /inference="alignment:Splign:2.1.0"
     exon            680..820
                     /gene="Lix1"
                     /inference="alignment:Splign:2.1.0"
     exon            821..916
                     /gene="Lix1"
                     /inference="alignment:Splign:2.1.0"
     exon            917..994
                     /gene="Lix1"
                     /inference="alignment:Splign:2.1.0"
     exon            995..1522
                     /gene="Lix1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 attgcaggaa gatgcctcta gactctagat tccagggaca gcacatttaa agatggaagg
       61 tttaaaaaaa aaatgcccaa atgggaaagc agcacagcgt ccaggcaaaa tctggttgga
      121 gaagagatct gctctcatga ttagtgagtt tcctcagcct gcctgtaggt gggtgtgttt
      181 aacagaacga agccatggga accagcctgt cagccagcct ttcaggctaa ttagctcagc
      241 atacaacaaa gataagtgag cctgagagga gggccctgag ggtctttaga ttctgggaaa
      301 tgtctgattg gcagatgtta aaagggattc tttggtaatc cagtgcatca atgagctgca
      361 caaattcagt ccagagctgg aagaactcag gcatgaggag actgtgcagg aggcttgcac
      421 aggcagaccc gagatggaca gaaccttgga atctctgagg cacatcattg cccaagcctt
      481 gcctcacaga gacccggctt tggtcttcaa agacttgaat gtcgtgtcca tgttacagga
      541 attttgggaa agcaagcagc agcagagagc cacattctcc agtgaggggc tggtggtcta
      601 tgagtcaatg ccttcctctg ggcctccctt tgtgagctat gtgactctcc ccggagggag
      661 ctgctttggc aacttccagt gctgcttaag tagagctgag gccaggcgag acgctgctaa
      721 agtggcactc atcaactctc tcttcaatga gctgccctcc cgaaggatca ccaaggagtt
      781 catcatggag agtgttcagg aagcagtagc ctccaccagg ggcactttag acgatgcgga
      841 tgaccccagc acaagtgtgg gagcctatca ctacatgctg gagtcaaaca tggggaagac
      901 tatgctggag tttcaggaac taatgaccat tttccaacta cttcactgga atggaagcct
      961 gaaagccctc cgtgaaacaa agtgctctcg acaggaagtc atctcctatt attcccaata
     1021 ttctttagat gaaaagatgc gtagccatat ggccctggac tggattatga aggagcgtga
     1081 atcaccagga attctctctc aagagctgcg tgcagccctg gggcagctgg aggaagccag
     1141 gaaggctgga caagaactac gattttacaa agaaaaaaaa gaaatcctga gcttggctct
     1201 gacacagatc tattgtgacc ctgacccttc ctcacccagt gatgaccaac tgagcctcac
     1261 agctctgtgt ggttatcatt agcaaggcta gcaaggctag tctcgggttt cctgaggact
     1321 ttcgcagcag gaatctactt gacggaagtt gttagacatt ttagcatgac agtcagtacc
     1381 tgaacactgt actgctctta cacagtctgg tcacagaatg ggaggctagg gttgttgact
     1441 gatccagacc ccaacttgca acttcatgta tgttttcaac catcccctta gtggttctac
     1501 ttcaaaataa aagaaagaca ac
//
