LOCUS       NM_001395427            1414 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus LITAF domain containing (Litafd), transcript
            variant 1, mRNA.
ACCESSION   NM_001395427
VERSION     NM_001395427.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1414)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.189674.1,
                                           SRR26360186.1512452.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1028              JAXUCZ010000010.1  7441322-7442349     c
            1029-1133           JAXUCZ010000010.1  7439376-7439480     c
            1134-1278           JAXUCZ010000010.1  7438917-7439061     c
            1279-1414           JAXUCZ010000010.1  7438382-7438517     c
FEATURES             Location/Qualifiers
     source          1..1414
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..1414
                     /gene="Litafd"
                     /gene_synonym="RGD1564086"
                     /note="LITAF domain containing"
                     /db_xref="GeneID:497862"
                     /db_xref="RGD:1564086"
     exon            1..1028
                     /gene="Litafd"
                     /gene_synonym="RGD1564086"
                     /inference="alignment:Splign:2.1.0"
     exon            1029..1133
                     /gene="Litafd"
                     /gene_synonym="RGD1564086"
                     /inference="alignment:Splign:2.1.0"
     exon            1134..1278
                     /gene="Litafd"
                     /gene_synonym="RGD1564086"
                     /inference="alignment:Splign:2.1.0"
     CDS             1169..1399
                     /gene="Litafd"
                     /gene_synonym="RGD1564086"
                     /note="isoform 1 is encoded by transcript variant 1;
                     lipopolysaccharide-induced tumor necrosis factor-alpha
                     factor homolog"
                     /codon_start=1
                     /product="lITAF domain-containing protein isoform 1"
                     /protein_id="NP_001382356.1"
                     /db_xref="GeneID:497862"
                     /db_xref="RGD:1564086"
                     /translation="MPVQIICPYCGNFITTVANPIPGLLTWLLCSGLFVFGCFLGCCL
                     LPFCMQSLMDVVHSCPMCRQELFYYRRLGFDL"
     exon            1279..1414
                     /gene="Litafd"
                     /gene_synonym="RGD1564086"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctttctttct ttctttcttt ctttctttct ttctttcttt ctttctttct ttctttcttt
       61 cttctttgca ggacccagcc ggtcagtcaa gaaagacaga aagcagatgt aagagacagg
      121 gatgggagga ctgcaggtca gtaccatgcc agcagcacgt gtactgtctc agtgtcttcc
      181 taaggcaagc aacacaaagc agggccaact ccaggaagat gaacaatgac cacaaatgct
      241 tacatggcaa gtttacgtac acagtgccta tgtttgacta aggccgtttc ctccaggcca
      301 ggccagtctc tcaaggacat atgtgtaagt ggagcaactc agccagttac aatgcatgca
      361 agtcttaact aaaaacaaag gcagatgttg gcagactcat tcctgattaa tcacaagaaa
      421 gaagtcagcc agagttaact ccagatgtgt tccccacatt ttcttccttc cttcctttct
      481 ttctctttct ttctttctct ttcctttcct ttttcttttt tttctttctt tctttctttt
      541 tttttttgat aagaactcaa ttatgtaccc cagaatggct ttgaatttcc cgtcctcctg
      601 cctcagcctt tgaagtgctg tgtggagact tcacacaggc tggtgacacc aggcctgagt
      661 ccaaacttac ttacattcta attaaaagga cactggtggt ggtgagctgg tctccctgcc
      721 cagctcacaa agcttccacc tgctactggg agcagggcag taagtggtta tggaagggtc
      781 cttcaagctg agtcatgggc aggcacccct ccagagggaa gtagacacaa gatcccctgc
      841 tctgtgcacc aaagacatca caatggctgt ggcagctgta agagaccttt ctcctcagtg
      901 gggcctcttc aagggaactt ctggaaccag gggcctgtcc actcagaacc tggaacccgt
      961 tgagtctgct caaggagtga ttctgaaaca aaggactctc atggcacaaa aagagaacca
     1021 gaaccatgac tttcagcagc gtagggagct accacctcct tattaccctc caagaggacc
     1081 aagatctaga gtatacccca tgtacaccca tgtcccacca acagtccaag caggcctgtt
     1141 cactagcagg cctcgtgtgg caacctccat gccggtgcag atcatatgtc cctactgtgg
     1201 gaactttatc acgacagtgg caaaccctat cccgggcctc ctcacctggc tgctgtgtag
     1261 tggcctcttt gtgtttgggt gcttcctggg ctgctgcctc ctccccttct gcatgcagag
     1321 cctcatggat gtggtccact cctgccccat gtgccgccag gagctcttct actaccgtcg
     1381 cctgggattt gatctataaa ctgcaataaa gcca
//
