LOCUS       XM_006231304            1320 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lipase family member J (Lipj), mRNA.
ACCESSION   XM_006231304
VERSION     XM_006231304.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006231304.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006231304.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 11% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1320
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1320
                     /gene="Lipj"
                     /note="lipase family member J; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     Proteins, and 25% coverage of the annotated genomic
                     feature by RNAseq alignments"
                     /db_xref="GeneID:100360690"
                     /db_xref="RGD:2321667"
     CDS             1..1200
                     /gene="Lipj"
                     /codon_start=1
                     /product="tear acid lipase-like protein"
                     /protein_id="XP_006231366.1"
                     /db_xref="GeneID:100360690"
                     /db_xref="RGD:2321667"
                     /translation="MWWLLRTLCFVHVIGSIFCFLNAKPKNPEANMNVSQIISYWGYE
                     SEEHEVMTEDGYILLIFRIPHGKNENKSSHNTRRPVVYLHHGLTVSADYWILDPPSNC
                     LAFLLADAGFEVWLGNSRGTNNARKHVRLDPDSKEFWDFSFNEQIEYDLPAIIYFILN
                     ETRQTQIYYIGHSQGVYLAYAAFATNPQLAQKIKINFALGPVVITKYLTGVFRTIAYI
                     HPTVIKTMFGEKDIFSKSNANDILRFLCHREQIATACTSLLIVLFGYNPGNLNESRID
                     VYSEHIPAGTSVRSILHFSQGIRSGLFQAYDWGSESLNVLHYNQSTPPIYNIEDMKVR
                     TAMWSGERDLLGDPKDVKNLAAKTPNLIYHKKIPHYNHMDFILGKDAVVQVYRKIIEF
                     INRDQSE"
ORIGIN      
        1 atgtggtggc tactgagaac attgtgtttt gtccatgtga ttggaagcat attttgtttt
       61 ttgaatgcca aaccgaagaa tcctgaagcc aatatgaatg ttagtcagat aatttcctac
      121 tggggctatg aaagtgaaga acacgaggtt atgactgagg atggctatat actcttaatc
      181 ttccggattc cacatgggaa gaatgagaac aagagctcac ataacactag gaggccagtc
      241 gtgtatttgc atcatggatt gactgtctct gctgattact ggattcttga ccctcccagc
      301 aactgcctcg cctttcttct ggcagatgct ggttttgaag tgtggctggg gaacagcagg
      361 ggcactaaca atgccaggaa acatgtgcgc ctagacccag attctaaaga attttgggat
      421 tttagtttta atgaacaaat agaatacgac ctcccagcca tcatttattt cattttgaat
      481 gagacaagac aaacacaaat ttactatatt ggccattccc agggcgtcta tcttgcgtat
      541 gcagcatttg cgacaaaccc acaactggcc cagaagatca aaatcaactt tgccctgggc
      601 cctgttgtga tcaccaagta tctgacaggt gtctttcgca caattgcata cattcaccca
      661 acagtgatca agaccatgtt tggtgaaaag gatatattca gcaaatcaaa tgcgaatgac
      721 atccttcggt tcttgtgcca tcgggaacaa attgcaacag cttgtactag tcttctaata
      781 gtgttgtttg gatacaaccc cgggaactta aatgagagtc gtattgatgt atatagtgaa
      841 catattccag caggaacttc agttcgaagt atacttcatt tttctcaggg aatcagatca
      901 ggcttattcc aagcttatga ctggggcagt gaatctctca atgtgctaca ctacaatcag
      961 tctactcctc caatatacaa catagaggac atgaaggttc gaactgctat gtggagtggt
     1021 gagagagatc ttctaggaga tccaaaagat gttaaaaacc tggcagcaaa aactcccaat
     1081 ctgatttacc acaagaagat tcctcactat aatcatatgg attttatact gggtaaagat
     1141 gctgttgtac aagtgtacag aaaaatcatt gaattcatca atagagatca atcagagtga
     1201 agatttttta gttctctgct tatttttcct gcttatttca gagggggcag cctcatccaa
     1261 gcaggggatg gaatagggtg tttaagtggg aagggtgata acatttgaaa tataaataaa
//
