LOCUS       NM_001109189            2955 bp    mRNA    linear   ROD 27-MAR-2024
DEFINITION  Rattus norvegicus leucine rich repeat and Ig domain containing 4
            (Lingo4), mRNA.
ACCESSION   NM_001109189 XM_001058732 XM_574987
VERSION     NM_001109189.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2955)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000002.1.
            
            On Aug 5, 2021 this sequence version replaced NM_001109189.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.1040292.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-263               JAXUCZ010000002.1  184724554-184724816
            264-2955            JAXUCZ010000002.1  184727128-184729819
FEATURES             Location/Qualifiers
     source          1..2955
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="2"
                     /map="2q34"
     gene            1..2955
                     /gene="Lingo4"
                     /gene_synonym="RGD1562025"
                     /note="leucine rich repeat and Ig domain containing 4"
                     /db_xref="GeneID:499668"
                     /db_xref="RGD:1562025"
     exon            1..263
                     /gene="Lingo4"
                     /gene_synonym="RGD1562025"
                     /inference="alignment:Splign:2.1.0"
     CDS             199..2055
                     /gene="Lingo4"
                     /gene_synonym="RGD1562025"
                     /codon_start=1
                     /product="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 4
                     precursor"
                     /protein_id="NP_001102659.1"
                     /db_xref="GeneID:499668"
                     /db_xref="RGD:1562025"
                     /translation="MGQTPALERCSAQLDAFPQLLRPQGMDAATAPKQAWLLWSPLLF
                     LLLLPGGSISSCPTLCDCTSQTRAVLCAHRRLDTVPGGLPLDTEVLDLSGNRLWGLQR
                     GMLSRLGQLQELDLSYNQLSTLEPGAFHGLQSLLTLRLQGNRLRIVGPGIFSGLSALT
                     LLDLRLNQIVLFLDGAFGELGSLQQLEVGDNHLVFVAPGAFSGLAKLSTITLERCNLS
                     TVPGLALAQLPALVALRLRELDIERLPSGALRGLGQLKELEIHHWPSLEALDPGSLVG
                     LNLSSLAITHCNLSSVPFQALHHLSFLQVLDLSQNPISAIPARRLSPLVRLQELRLSG
                     ACLTSIAAHAFHGLTAFHLLDVADNALQTLEETAFPSPDKLVTLRLSGNPLTCDCRLL
                     WLLRLRRRLDFGTSPPACAGPQHVQGKNLREFSDILPPGHFTCKPALIRKSGPRWVIA
                     EEGGHAVFSCSGDGDPAPTVSWMRPQGSWLGRVGRVRVLEDGTLEIRSVQLRDRGAYV
                     CVVSNVAGNDSLRTWLEVIQVEPPNGTLSDPNVTMPGIPGPFSLDSRGVAMVLAVGFL
                     PFLTSVTLCFGLIALWSKGKGRVKHHMTFDFVAPRPSGDKNSGGNRVTAKLF"
     exon            264..2955
                     /gene="Lingo4"
                     /gene_synonym="RGD1562025"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gagaagagga gggaaaaaaa aaaaaagaaa agaaaatgct tcctggctct tttctctccc
       61 tcagtcttgg cagcgcggcc gcagtagcag cggccacaac agcagtcttg ccagccggct
      121 gatgcggcag gctgccgggc agcagggagt ggggagtcag acacacaggg gaggtggaga
      181 ggccaaggtg cagctcgaat gggacagacc ccagccctgg agagatgcag cgcccaactt
      241 gatgccttcc cccagcttct ccggcctcag gggatggacg cagccactgc cccaaagcaa
      301 gcctggctcc tgtggtcccc actccttttc ctgctcctcc tgcctggggg gagcatcagt
      361 agctgcccca ctttgtgtga ctgcacctcc cagacccggg cagtactctg tgcccacagg
      421 cgactggaca ctgtccctgg agggcttcca ctggacacag aagtcctgga tttgagtggg
      481 aaccgcctgt gggggcttca gcgtggcatg ctctcccgac tgggccagct ccaagaactg
      541 gacctcagct acaaccagct ctccaccctt gagcctgggg ctttccatgg cctacagagt
      601 ctactcaccc tgaggctgca gggcaatcga ctgagaattg tgggtcctgg gatattctca
      661 ggcctgtctg ccctcacgct gctggacctc cgcctcaatc aaattgtcct ctttctagat
      721 ggagcctttg gtgagctagg cagcctccag cagctggagg ttggagacaa tcacctggtg
      781 tttgtagctc cgggagcatt ttcaggtctg gccaaactaa gtaccatcac tctggaacgg
      841 tgcaacctca gcacagtgcc tggcctagct cttgcccagc tcccagcact agtagctctt
      901 agacttcgag aactagatat tgagaggctg ccctctgggg cacttcgagg gctagggcaa
      961 ctaaaggagc tggagatcca ccactggcca tctctggagg ccctggaccc agggagcctg
     1021 gttggcctca atctgagcag cctggccatc acccactgca atctgagctc agtacccttc
     1081 caagcactac accacttgag cttcctccaa gtcttggatc tatctcagaa tcctatatca
     1141 gccatcccag cccggaggct cagccccctg gtacggctcc aggagctcag actgtcgggg
     1201 gcctgcctca cctccatcgc tgcccatgcc ttccacggcc tgactgcctt ccacttactg
     1261 gatgtagcag acaatgctct tcagacccta gaggaaacag ccttcccttc tccagacaaa
     1321 ctggtcacct tgaggctgtc tggtaacccc ctaacctgtg attgccgcct cctctggctg
     1381 ctccgccttc gccggcgcct ggactttggc acatcacccc ctgcttgtgc tggcccccag
     1441 catgtccaag ggaagaacct aagggaattt tcagacattc tgcctccagg ccacttcact
     1501 tgcaaaccgg ccctgatccg aaagtcaggg cctcgatggg tcattgcaga ggagggcggg
     1561 catgctgttt tctcctgctc tggagatggg gatccagccc ccactgtttc ctggatgaga
     1621 cctcagggat cttggctagg gagggttggg agggtaaggg tgctagagga tggtacgctg
     1681 gagatccgct cggtgcagct acgggacagg ggggcctacg tctgtgtggt cagcaatgtt
     1741 gctgggaatg actctctgag aacctggctg gaagttatcc aagttgagcc accaaatggc
     1801 actctgtctg accccaacgt cactatgccg gggatcccag ggcctttctc tctggacagc
     1861 agaggtgtag ctatggtgct agcagtgggc ttcctcccct tcctcacctc agtgaccctt
     1921 tgctttggtc tgattgctct ttggagtaag ggcaagggcc gggtcaagca ccacatgact
     1981 tttgattttg tggcccctcg gccctctggg gacaagaact ctgggggtaa tcgggtcact
     2041 gccaagttat tctgaccttt ccatccacaa tgaagaccac cggagtccat ttcagaagcc
     2101 aaaggggaag gtaggagtaa ggtctctgga accacagctt cccgccgaac agtacagcct
     2161 tccacacctg tcccctgcat tgtgattgct gctctagtct gagcatggcc ttgctgcatc
     2221 ttctctgagg gccccaggga actgcacatc cccgacccca ggtacccact cactcaaggc
     2281 aggaaagcta cacaaggctc cagtctgctc tccacgtatg tataccctca aatagccagg
     2341 accagttacc aaacaaccat gagatcattt cagaagagtt gggaagctct tcaggcttct
     2401 tagagtctgc tcaccaggcg ggcgggcagg cggatgggca ggcaggctcc ctttcttttc
     2461 tgctacctag tacccaatcc agccagtgcc cttacctaag gtacaggaag ggactcgagc
     2521 caaggattcc agtggataca gaggagtgtg gcctcactac actctggcac cttgcatgca
     2581 ggagcctcca ccaccttcct ggttgtcgaa agcaaccgca gtgacagcaa gaatgaaaca
     2641 ggatctctgg aacttcattt actcccatct gcttctcctc tccctcccat ttcagctatt
     2701 ggtcatctag cctccaccac accaagcctg gcccagaagg tgaggaggct caggagccct
     2761 gcagaggtca gcactcctca ccctctccgg ctgcgtccct tccccttttc tcttctctct
     2821 agagataaag aaggcaagtc cgccatcttt aaagggatcg ctacacagaa ctctcctatt
     2881 tcacaccttc tgccattccc agtgttgtgt atcccaggca ggcttgacaa ggggaaagcc
     2941 agagggggct cctag
//
