LOCUS       NM_001107926            2941 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus leucine rich repeat and Ig domain containing 2
            (Lingo2), mRNA.
ACCESSION   NM_001107926 XM_001057633 XM_001057690 XR_006940
VERSION     NM_001107926.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2941)
  AUTHORS   Loh,K.H., Stawski,P.S., Draycott,A.S., Udeshi,N.D., Lehrman,E.K.,
            Wilton,D.K., Svinkina,T., Deerinck,T.J., Ellisman,M.H., Stevens,B.,
            Carr,S.A. and Ting,A.Y.
  TITLE     Proteomic Analysis of Unbounded Cellular Compartments: Synaptic
            Clefts
  JOURNAL   Cell 166 (5), 1295-1307 (2016)
   PUBMED   27565350
REFERENCE   2  (bases 1 to 2941)
  AUTHORS   Um,J.W., Pramanik,G., Ko,J.S., Song,M.Y., Lee,D., Kim,H.,
            Park,K.S., Sudhof,T.C., Tabuchi,K. and Ko,J.
  TITLE     Calsyntenins function as synaptogenic adhesion molecules in concert
            with neurexins
  JOURNAL   Cell Rep 6 (6), 1096-1109 (2014)
   PUBMED   24613359
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473962.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XR_006940.1, XM_001057633.1, XM_001057690.1.
FEATURES             Location/Qualifiers
     source          1..2941
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q21-q22"
     gene            1..2941
                     /gene="Lingo2"
                     /gene_synonym="RGD1310773"
                     /note="leucine rich repeat and Ig domain containing 2"
                     /db_xref="GeneID:313156"
                     /db_xref="RGD:1310773"
     exon            1..197
                     /gene="Lingo2"
                     /gene_synonym="RGD1310773"
                     /inference="alignment:Splign:2.1.0"
     exon            198..304
                     /gene="Lingo2"
                     /gene_synonym="RGD1310773"
                     /inference="alignment:Splign:2.1.0"
     exon            305..2941
                     /gene="Lingo2"
                     /gene_synonym="RGD1310773"
                     /inference="alignment:Splign:2.1.0"
     CDS             340..2160
                     /gene="Lingo2"
                     /gene_synonym="RGD1310773"
                     /note="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 2"
                     /codon_start=1
                     /product="leucine-rich repeat and immunoglobulin-like
                     domain-containing nogo receptor-interacting protein 2
                     precursor"
                     /protein_id="NP_001101396.1"
                     /db_xref="GeneID:313156"
                     /db_xref="RGD:1310773"
                     /translation="MLHTAIPCWQPFLGLAMVLLFMGSTIGCPARCECSAQNKSVSCH
                     RRRLIAIPEGIPIETKILDLSKNRLKSINPEEFISYPLLEEIDLSDNIIANVEPGAFN
                     NLFNLRSLRLKGNRLKLVPLGVFTGLSNLTKLDISENKIVILLDYMFQDLHNLKSLEV
                     GDNDLVYISHRAFSGLFSLEQLTLEKCNLTAVPTEALSHLRSLITLHLKHLNINNMPV
                     YAFKRLFHLKQLEIDYWPLLDMMPANSLYGLNLTSLSITNTNLSTVPFLAFKHLVYLT
                     HLNLSYNPISTIEAGMFSDLIRLQELHVVGAQLRTIEPHSFQGLRFLRVLNVSQNLLE
                     TLEENVFSSPRALEVLSINNNPLACDCRLLWLLQRQATLQFGGQQPMCAGPDTIRERS
                     FKDFHSTALSFYFTCKKPKIREKKLQHLLVDEGQTVQLECNADGDPQPVISWVTPRRR
                     FITTKSNGRATVLGDGTLEIRFAQDQDSGMYVCIASNAAGNDTFTASLTVKGFTSDRF
                     LYANRTPMYMTDSNDTVSNGTNANTFSLDLKTILVSTAMGCFTFLGVVLFCFLLLFVW
                     SRGKGKHKNSIDLEYVPRKNNGAVAEGEVAGPRRFNMKMI"
ORIGIN      
        1 gtgccagggc actctagaaa cccagcctgc atgtagacag ccctgcctac tgcagaagat
       61 gattcctgcc ccgggttaaa cgtgtacaac tcgtggaaat gccagtacct tccacctgaa
      121 ggcacttagt ggctagaaaa ccagcaatct accccgaaac acactgtact aaacacagca
      181 agagaccaca atgattggac atagacctat aaggatacac tttgagaaag atgccagttg
      241 ttcctcagga tgcactttga aaatgcagtc attctagctg gtaccgcaaa atgagtgcat
      301 taaggcccat aaccaaggtg tagaataaac agtggagtca tgcttcacac ggctatacca
      361 tgctggcagc cattcctggg tctggctatg gtgttactct tcatgggatc caccattggc
      421 tgtcctgctc gctgtgagtg ctctgcccag aacaaatctg ttagctgcca cagaagacgc
      481 ttgatcgcga tccccgaagg cattcccatt gagaccaaaa tcttggacct gagcaaaaat
      541 cgactaaaga gcataaaccc cgaagaattc atctcatatc ctctgttgga ggagatagac
      601 ttgagcgaca acatcatcgc caatgtagaa cctggggcat ttaacaatct ctttaacctg
      661 cgttccctcc gcctaaaagg caatcgcctt aagttggtcc ctttgggagt attcacggga
      721 ctgtccaacc tcaccaagct tgacattagt gagaataaga ttgtcatttt gctggactac
      781 atgttccagg atctgcataa cctgaagtct ctagaagtgg gggacaatga tttggtttat
      841 atatcacaca gggccttcag tggactattt agcttggagc agctcaccct ggagaagtgc
      901 aacttgacag cggtaccaac agaagccctt tcccatctcc gcagcctcat caccctgcat
      961 ctgaagcatc tcaatatcaa caatatgcct gtgtatgcct ttaaaagatt attccacctg
     1021 aaacaactag agatcgacta ttggccattg ctggatatga tgccagccaa tagcctctat
     1081 ggtctcaacc tcacatccct ctcgatcact aacaccaacc tgtccactgt ccctttcctc
     1141 gcctttaaac accttgtata cctgacccac cttaacctct cctacaatcc catcagcact
     1201 attgaagcag gcatgttctc tgacctgatc cgcctacagg agcttcatgt agtcggggcc
     1261 cagctccgca ccattgaacc tcactccttc caagggctcc gcttcctccg cgtgctcaat
     1321 gtatctcaga acctgctgga aacattggaa gagaatgtct tctcttcccc tagggctttg
     1381 gaggtcctga gcattaacaa taacccacta gcgtgcgact gccgacttct ctggctcctg
     1441 cagcgacagg ccaccctgca gtttggaggc cagcagccca tgtgtgccgg gccagacacc
     1501 atacgtgaga ggtcatttaa ggatttccat agcactgctc tttcttttta ttttacctgc
     1561 aaaaaaccca aaatccgtga aaagaagtta cagcacctcc tagtggacga aggacagacg
     1621 gtccagctgg agtgcaacgc ggatggagac ccccagcccg tgatttcctg ggtgacacct
     1681 cgaaggcgtt ttatcaccac caagtccaac ggaagggcca ctgtgttggg tgatggcacc
     1741 ttagaaatcc gtttcgccca ggatcaagac agtgggatgt atgtttgcat agctagcaat
     1801 gctgctggga atgacacctt cacggcatct ctcactgtga agggattcac ttcagaccgc
     1861 ttcctttacg caaacaggac ccctatgtac atgactgact ccaatgacac cgtttccaac
     1921 ggcactaatg ccaatacttt ttccctggac cttaaaacaa tactggtatc tacagccatg
     1981 ggctgtttca cattcctggg agtggtttta ttttgttttc tccttctttt tgtgtggagc
     2041 cgaggaaagg gcaaacacaa aaacagcatt gaccttgagt atgtgccccg aaaaaacaat
     2101 ggtgctgttg cagaagggga ggtggctgga cccaggaggt tcaacatgaa aatgatataa
     2161 gggcccacca cacacacact actactgtct ctgtgttact gttggtaatg agtaagacgt
     2221 ctgatatagc gagtccatca caaggtgatc aggcagcttc acacagctgc ccctgtgtca
     2281 aagcagggtc catggaagct ggaagacttc tcatggacac tggctgatta gaggcaggca
     2341 ggcatgtgtc agagcccttc acacagtggg atactaattg tttgcattgc aaatattggc
     2401 attctgggga tctcagtaat gaccctgaac ctttggctca tgctgacgga caaaaattca
     2461 acattttcta ccactgcaaa actaaaagaa aaaaaattta aaaggaacaa cctacagtgt
     2521 aggatttaca tattaaaaaa agacacattt gtctaaaaca tactctacgg taaaatttgt
     2581 atttattatc atttgttaaa accttgcatc atacaatact gttggttcag caccaaaaaa
     2641 aaaaaaaaaa aaaaaaagag agatcaatat attctttttt gaaacatata tgctgtatat
     2701 gttttaaagc aatatgaatg agaggttgtg cttttagtta ctcaccagta tagatccaag
     2761 tgtggtctca ctttcctttt atccgcagag aaacctgaga atagatccct ggaataatag
     2821 gctgagatgt gttgagatgt gtatgtctga tgtaggatgc caagatacaa gagcccagtc
     2881 aaaactgctc aactctgtta acttctgtta ctataaataa aggcatgtgc ctagttttga
     2941 t
//
