LOCUS       XM_039091469            2981 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lin-9 DREAM MuvB core complex
            component (Lin9), transcript variant X5, mRNA.
ACCESSION   XM_039091469
VERSION     XM_039091469.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039091469.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2981
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2981
                     /gene="Lin9"
                     /note="lin-9 DREAM MuvB core complex component; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 8 ESTs, 3 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 25 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:689523"
                     /db_xref="RGD:1591104"
     CDS             193..1665
                     /gene="Lin9"
                     /codon_start=1
                     /product="protein lin-9 homolog isoform X3"
                     /protein_id="XP_038947397.1"
                     /db_xref="GeneID:689523"
                     /db_xref="RGD:1591104"
                     /translation="MPFRNSKRSRLFSDEDDRQINTKSPKRNQRVAMIPQKFTATMST
                     PDKKASQKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLK
                     TRKLTRVEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDL
                     PDEIPLPLVIGTKVTARLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYE
                     VLSNEPHETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPITDGDPLLGQSPWRSKIS
                     GSDTETLGGFPVEFLIQVTKLSKILMIKKEHIKKLREMNTEAEKLKSYSMPIGIEFQR
                     RYATIVLELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVR
                     QANSASGQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKNTI
                     DASNISCFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD"
ORIGIN      
        1 ctcgaccagt tgcctgacga gagctcttca gcgaaagccc ttgtcagttt aaaaggggca
       61 ggacattcat gtggtgctgg atacacagca aaacagccat agggaagttt atctaacaca
      121 tggaatgaaa agtacagttc tttacagaaa actcctgttt ggaaaggcag gaatgcgggc
      181 cctgctgtag aaatgccttt cagaaattca aaaagaagtc gactcttttc tgatgaagat
      241 gacagacaaa taaatacaaa gtcacctaaa agaaaccaga gagtcgcaat gatccctcag
      301 aaatttacag caacgatgtc aacaccagat aagaaagcat cacagaagat tggttttcga
      361 ttgcggaacc tactcaagct tcccaaagca cataaatggt gcatctatga gtggttctac
      421 tcaaacatag acaagccact ttttgaagga gataatgact tctgtgtatg tctaaaggaa
      481 tcctttccta atttaaaaac aagaaaatta acaagagtag aatggggaaa aatcaggaga
      541 ttgatgggaa aacctcggag gtgttcttct gcatttttcg aggaagagag atcagcctta
      601 aaacagaagc ggcagaaaat caggctgttg caacaaagga aagttgcaga tgtttcacag
      661 ttcaaagatc tccccgatga aattcctcta cccctggtta ttggaaccaa agttacagca
      721 cgattacgtg gcattcacga tggtctgttt actggtcaga tagatgctgt ggatactctt
      781 aatgctactt acagagtaac tttcgatagg acagggcttg ggactcacac cattcctgac
      841 tatgaagttc ttagtaatga gcctcatgag acaatgccaa tcgctgcctt tggacagaaa
      901 cagcggcctt ctcggttttt tatgaccccc ccacggttac attacacccc tcctctccaa
      961 tcaccaatta cagatggtga tcccttgcta ggacagtcgc cttggagaag taaaatttct
     1021 ggctctgaca cggagacgtt aggaggcttt ccagtagaat tccttatcca ggtgactaag
     1081 ttatcaaaaa tcctcatgat taaaaaggag cacatcaaga aattaaggga aatgaacaca
     1141 gaagcagaaa agctgaagtc atactccatg cccataggca ttgaatttca gcggcggtat
     1201 gcaacgattg ttctggagct ggagcagctg aacaaggacc tgaacaaagt gctacacaag
     1261 gttcagcagt actgctacga gcttgcacca gaccagggac tccagcctgc tgatcagccg
     1321 acagacatga ggcggaggtg tgaggaggaa gcccaggaaa tcgtccggca agccaactct
     1381 gcctcagggc agccctgtgt tgaaaacgaa aatctgacgg acttaatctc caggctcact
     1441 gcgattttat tacaaattaa gtgtctggca gagggaggag acctgaattc ctttgaattc
     1501 aaatccctga cagattcatt aaatgacata aagaacacaa tagatgcttc taatatcagt
     1561 tgttttcaga ataatgtaga aatccacgtt gcacatatcc agagtggcct gagccagatg
     1621 gggaacctgc acgcctttgc agccaacaac actaacaggg actgagcaca gcagtcctgc
     1681 tacccagccg cacacgaccg tggtctgagg agtccttttc attaatccaa gcttccaaca
     1741 ccagataagc tatctgctgg gaaacaagag aactgtacac ctccagatac ggctttgtag
     1801 tacaccgtac tgcttcttag ccagcagtgc tgaccagcgt ttattcattg ttcttttatc
     1861 atcatccagg tgcagtagtg tcgcttatat ttcatgctta tcagcaagta tgtttaacct
     1921 gaacctgtct gaatgcactg tctcatgtgc tcaccatagt ttatacatgc atgaattctg
     1981 cccagcacac gcagatgact cctgtgacag agaacatgga gaagtatggt ctttccatgc
     2041 atgatggtgg gaatctcatc tgagaatccc gagtccgtgg actcagttga ccgttctatc
     2101 tcaggcttca gaatagacgc gtgggtgtgg gaaggaagtc ctagtcttac ggaagccact
     2161 gggatgcaga tgggaaggaa gcacggcctt atgtctgtca cagatgctga ccgtgtgact
     2221 cgcttctgta gatcaactgt aataataata tttaatttat cataatttat aaaagctttg
     2281 ttgttcatca gcagaagaca atgaaggagc aggggagctg tgctgtggaa tgctgggttt
     2341 cggcagtgga cttggcgtgc cttcccatga ttcagggcac aaagcgctat cgctaagatt
     2401 tattttaaaa aaagactgat aacacactat tttcgtattt ttttgtttat ttgcacaact
     2461 ttaaaccaga ttactggtta aaactcaaca gtacacagtt tataaagtaa aaatatttta
     2521 taaggaaagc atatgaccag tgtgaattac agagaggttt ggttttagtt gttttcttgt
     2581 ttggtttggt tttttctttt taagaaaaac cctgtctaca ataatcttgt aaaaagtatg
     2641 tattttaaaa tgtttgtttt aatatagagt attataaagc caaaatataa ttgctttcag
     2701 atttggagtt taaaatagag ctatagaggt ggttctgatt gtttgacatc tcataaaatg
     2761 agacttttgt atattaatgt ataataaaac tgaaataaga ttattttcct tgaaattttt
     2821 gtatagttta aaaatgcttc tgtgttcttt gttggtattg ggccactgca gatcttagtg
     2881 cagagtttat atttagctaa actgttacgt taattaagaa atgcataaat cttttattct
     2941 taatatttgt aattctaaat aaatcaatct atgaaattta a
//
