LOCUS       NM_001398750            2970 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus lin-9 DREAM MuvB core complex component (Lin9),
            mRNA.
ACCESSION   NM_001398750 XM_001067807
VERSION     NM_001398750.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2970)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            On Dec 22, 2021 this sequence version replaced XM_001067807.6.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.2270034.1,
                                           SRR26643294.48889.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-56                JAXUCZ010000013.1  94906803-94906858
            57-89               JAXUCZ010000013.1  94914015-94914047
            90-184              JAXUCZ010000013.1  94916455-94916549
            185-289             JAXUCZ010000013.1  94917420-94917524
            290-423             JAXUCZ010000013.1  94922852-94922985
            424-549             JAXUCZ010000013.1  94925309-94925434
            550-707             JAXUCZ010000013.1  94929762-94929919
            708-841             JAXUCZ010000013.1  94931246-94931379
            842-961             JAXUCZ010000013.1  94932622-94932741
            962-1063            JAXUCZ010000013.1  94932998-94933099
            1064-1144           JAXUCZ010000013.1  94937642-94937722
            1145-1270           JAXUCZ010000013.1  94945041-94945166
            1271-1450           JAXUCZ010000013.1  94948792-94948971
            1451-1548           JAXUCZ010000013.1  94949096-94949193
            1549-2970           JAXUCZ010000013.1  94950120-94951541
FEATURES             Location/Qualifiers
     source          1..2970
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q26"
     gene            1..2970
                     /gene="Lin9"
                     /note="lin-9 DREAM MuvB core complex component"
                     /db_xref="GeneID:689523"
                     /db_xref="RGD:1591104"
     exon            1..56
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     CDS             26..1654
                     /gene="Lin9"
                     /note="lin-9 homolog"
                     /codon_start=1
                     /product="protein lin-9 homolog"
                     /protein_id="NP_001385679.1"
                     /db_xref="GeneID:689523"
                     /db_xref="RGD:1591104"
                     /translation="MAELDQLPDESSSAKALVSLKEGSLSNTWNEKYSSLQKTPVWKG
                     RNAGPAVEMPFRNSKRSRLFSDEDDRQINTKSPKRNQRVAMIPQKFTATMSTPDKKAS
                     QKIGFRLRNLLKLPKAHKWCIYEWFYSNIDKPLFEGDNDFCVCLKESFPNLKTRKLTR
                     VEWGKIRRLMGKPRRCSSAFFEEERSALKQKRQKIRLLQQRKVADVSQFKDLPDEIPL
                     PLVIGTKVTARLRGIHDGLFTGQIDAVDTLNATYRVTFDRTGLGTHTIPDYEVLSNEP
                     HETMPIAAFGQKQRPSRFFMTPPRLHYTPPLQSPITDGDPLLGQSPWRSKISGSDTET
                     LGGFPVEFLIQVTKLSKILMIKKEHIKKLREMNTEAEKLKSYSMPIGIEFQRRYATIV
                     LELEQLNKDLNKVLHKVQQYCYELAPDQGLQPADQPTDMRRRCEEEAQEIVRQANSAS
                     GQPCVENENLTDLISRLTAILLQIKCLAEGGDLNSFEFKSLTDSLNDIKNTIDASNIS
                     CFQNNVEIHVAHIQSGLSQMGNLHAFAANNTNRD"
     exon            57..89
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            90..184
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            185..289
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            290..423
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            424..549
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            550..707
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            708..841
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            842..961
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            962..1063
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            1064..1144
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            1145..1270
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            1271..1450
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            1451..1548
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
     exon            1549..2970
                     /gene="Lin9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaaaagcgg cgcggctcgt tcaagatggc ggagctcgac cagttgcctg acgagagctc
       61 ttcagcgaaa gcccttgtca gtttaaaaga gggaagttta tctaacacat ggaatgaaaa
      121 gtacagttct ttacagaaaa ctcctgtttg gaaaggcagg aatgcgggcc ctgctgtaga
      181 aatgcctttc agaaattcaa aaagaagtcg actcttttct gatgaagatg acagacaaat
      241 aaatacaaag tcacctaaaa gaaaccagag agtcgcaatg atccctcaga aatttacagc
      301 aacgatgtca acaccagata agaaagcatc acagaagatt ggttttcgat tgcggaacct
      361 actcaagctt cccaaagcac ataaatggtg catctatgag tggttctact caaacataga
      421 caagccactt tttgaaggag ataatgactt ctgtgtatgt ctaaaggaat cctttcctaa
      481 tttaaaaaca agaaaattaa caagagtaga atggggaaaa atcaggagat tgatgggaaa
      541 acctcggagg tgttcttctg catttttcga ggaagagaga tcagccttaa aacagaagcg
      601 gcagaaaatc aggctgttgc aacaaaggaa agttgcagat gtttcacagt tcaaagatct
      661 ccccgatgaa attcctctac ccctggttat tggaaccaaa gttacagcac gattacgtgg
      721 cattcacgat ggtctgttta ctggtcagat agatgctgtg gatactctta atgctactta
      781 cagagtaact ttcgatagga cagggcttgg gactcacacc attcctgact atgaagttct
      841 tagtaatgag cctcatgaga caatgccaat cgctgccttt ggacagaaac agcggccttc
      901 tcggtttttt atgacccccc cacggttaca ttacacccct cctctccaat caccaattac
      961 agatggtgat cccttgctag gacagtcgcc ttggagaagt aaaatttctg gctctgacac
     1021 ggagacgtta ggaggctttc cagtagaatt ccttatccag gtgactaagt tatcaaaaat
     1081 cctcatgatt aaaaaggagc acatcaagaa attaagggaa atgaacacag aagcagaaaa
     1141 gctgaagtca tactccatgc ccataggcat tgaatttcag cggcggtatg caacgattgt
     1201 tctggagctg gagcagctga acaaggacct gaacaaagtg ctacacaagg ttcagcagta
     1261 ctgctacgag cttgcaccag accagggact ccagcctgct gatcagccga cagacatgag
     1321 gcggaggtgt gaggaggaag cccaggaaat cgtccggcaa gccaactctg cctcagggca
     1381 gccctgtgtt gaaaacgaaa atctgacgga cttaatctcc aggctcactg cgattttatt
     1441 acaaattaag tgtctggcag agggaggaga cctgaattcc tttgaattca aatccctgac
     1501 agattcatta aatgacataa agaacacaat agatgcttct aatatcagtt gttttcagaa
     1561 taatgtagaa atccacgttg cacatatcca gagtggcctg agccagatgg ggaacctgca
     1621 cgcctttgca gccaacaaca ctaacaggga ctgagcacag cagtcctgct acccagccgc
     1681 acacgaccgt ggtctgagga gtccttttca ttaatccaag cttccaacac cagataagct
     1741 atctgctggg aaacaagaga actgtacacc tccagatacg gctttgtagt acaccgtact
     1801 gcttcttagc cagcagtgct gaccagcgtt tattcattgt tcttttatca tcatccaggt
     1861 gcagtagtgt cgcttatatt tcatgcttat cagcaagtat gtttaacctg aacctgtctg
     1921 aatgcactgt ctcatgtgct caccatagtt tatacatgca tgaattctgc ccagcacacg
     1981 cagatgactc ctgtgacaga gaacatggag aagtatggtc tttccatgca tgatggtggg
     2041 aatctcatct gagaatcccg agtccgtgga ctcagttgac cgttctatct caggcttcag
     2101 aatagacgcg tgggtgtggg aaggaagtcc tagtcttacg gaagccactg ggatgcagat
     2161 gggaaggaag cacggcctta tgtctgtcac agatgctgac cgtgtgactc gcttctgtag
     2221 atcaactgta ataataatat ttaatttatc ataatttata aaagctttgt tgttcatcag
     2281 cagaagacaa tgaaggagca ggggagctgt gctgtggaat gctgggtttc ggcagtggac
     2341 ttggcgtgcc ttcccatgat tcagggcaca aagcgctatc gctaagattt attttaaaaa
     2401 aagactgata acacactatt ttcgtatttt tttgtttatt tgcacaactt taaaccagat
     2461 tactggttaa aactcaacag tacacagttt ataaagtaaa aatattttat aaggaaagca
     2521 tatgaccagt gtgaattaca gagaggtttg gttttagttg ttttcttgtt tggtttggtt
     2581 ttttcttttt aagaaaaacc ctgtctacaa taatcttgta aaaagtatgt attttaaaat
     2641 gtttgtttta atatagagta ttataaagcc aaaatataat tgctttcaga tttggagttt
     2701 aaaatagagc tatagaggtg gttctgattg tttgacatct cataaaatga gacttttgta
     2761 tattaatgta taataaaact gaaataagat tattttcctt gaaatttttg tatagtttaa
     2821 aaatgcttct gtgttctttg ttggtattgg gccactgcag atcttagtgc agagtttata
     2881 tttagctaaa ctgttacgtt aattaagaaa tgcataaatc ttttattctt aatatttgta
     2941 attctaaata aatcaatcta tgaaatttaa
//
