LOCUS       NM_001100564            4340 bp    mRNA    linear   ROD 05-FEB-2024
DEFINITION  Rattus norvegicus lin-54 DREAM MuvB core complex component (Lin54),
            mRNA.
ACCESSION   NM_001100564 XM_001056268 XM_001061440 XM_223187
VERSION     NM_001100564.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4340)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 4340)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000248.1, EV774847.1 and BC099076.1.
            
            [WARNING] On Mar 15, 2024 this sequence was replaced by
            NM_001100564.2.
            
            On or before Jan 20, 2008 this sequence version replaced
            XM_001056268.1, XM_223187.4, XM_001061440.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data because no single transcript was available
            for the full length of the gene. The extent of this transcript is
            supported by orthologous data.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132262,
                              SAMD00132265 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-393               JACYVU010000248.1  4608250-4608642
            394-963             EV774847.1         1-570
            964-4340            BC099076.1         1-3377
FEATURES             Location/Qualifiers
     source          1..4340
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="14"
                     /map="14p22"
     gene            1..4340
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /note="lin-54 DREAM MuvB core complex component"
                     /db_xref="GeneID:305171"
                     /db_xref="RGD:1311361"
     exon            1..716
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     CDS             33..2282
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /codon_start=1
                     /product="protein lin-54 homolog"
                     /protein_id="NP_001094034.1"
                     /db_xref="GeneID:305171"
                     /db_xref="RGD:1311361"
                     /translation="MEVVPAEVNSLLPDDIMDTAITLVDEDSIEAVIVSSPIPMETEL
                     EEIVSINSTGDSTATPISTEPITVYSNHTNQVAVNTTVSKADSNTTVKPAFPSGLQKL
                     GAQTPVTISANQIILNKVSQTSDLKLGNQTLKPDGQKLILTTLGKSGSPIVLALPHSQ
                     LPQAQKVTAQAQPGDAKLPPQQIKVVTIGGRPEVKPAIGVSALTPGSQLINTTTQPSV
                     LQTQQLKTVQIAKKPRTPTSGPVITKLIFAKPINSKAVTGQTTQASPPVVTGRVLSQS
                     APGTPSKTITISESGVIGSTLNSTTQTPNKIAISPLKSPNKTVKSAVQTITVGGMSTS
                     QFKTIIPLAAAPNVQPIQVPGSKFHYVRLVTATTAGSSAPPVSQSPSVNTQPLQQAKP
                     VVVNTTPVRMSVPFVQAQAVKQVVPKPINSTSQIVTTSQPQQRLIMPATPLPQIQPNL
                     TNLPPGTVLAPAPGTGNVGYAVLPAQYVTQLQQSSYVSIAGNSNFTGTSGIQTQARVS
                     FNGIIPSESASRPRKPCNCTKSLCLKLYCDCFANGEFCNNCNCTNCYNNLEHENERQK
                     AIKACLDRNPEAFKPKIGKGKEGESDRRHSKGCNCKRSGCLKNYCECYEAKIMCSSIC
                     KCIGCKNFEESPERKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRPTPALNSGGG
                     KLPFTFVTKEVAEATCNCLLAQAEQADKKGKSKAAAERMILEEFGRCLMSVINSAGKA
                     KSDPCAMHC"
     exon            717..840
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            841..983
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            984..1200
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            1201..1274
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            1275..1472
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            1473..1564
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            1565..1636
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            1637..1739
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            1740..1877
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            1878..2080
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
     exon            2081..4320
                     /gene="Lin54"
                     /gene_synonym="RGD1311361"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cacctgggca tccttccaga agcagtgcga ccatggaggt ggtgccggcc gaggtgaata
       61 gcttgcttcc agacgacata atggacactg ctattacttt agtggatgag gatagcattg
      121 aggctgtaat tgtgtcatcc ccaattccca tggagacaga actggaagaa attgtcagca
      181 taaattctac tggtgactct acagccacgc ccatttccac ggaaccaatc acagtgtaca
      241 gtaatcacac taaccaagtt gcagtgaata ccacagtttc taaagcagac tccaatacca
      301 cagtgaaacc agcatttccg agtggccttc aaaagcttgg tgctcagact cctgtgacta
      361 tatcagccaa tcagattatt ttaaacaaag tatcacagac atctgatctt aaacttggca
      421 atcagaccct taaaccagat ggacagaagt taatcttaac aactttgggc aagtctggct
      481 caccaattgt tttagcactt ccccatagcc aactacccca ggctcagaaa gttacagctc
      541 aggcccaacc aggagacgct aagttaccac cgcagcagat caaagtagtt accattggag
      601 ggaggccaga ggtgaaacct gccattgggg tctcagcact gaccccagga agtcaactga
      661 ttaataccac aactcagccc tctgtgttac agacccaaca gttaaaaaca gtgcagattg
      721 ctaagaagcc tcgaacacca acctcgggtc cagtgatcac gaagctgatt tttgcaaaac
      781 caattaatag taaagcagtt acgggacaga caactcaagc gtctccaccc gtcgtcacag
      841 gcagggttct ttcacagtct gctcctggaa ctccatccaa gactataaca atatcagaaa
      901 gtggtgttat tggctcaact ttaaattcta caacacagac accaaataag atagccatct
      961 cacctttgaa gtcaccaaat aagacagtga agtcggctgt gcagaccatc acggtgggcg
     1021 gaatgagcac gtcgcagttt aagaccatca ttcccctggc agctgctccc aatgtccagc
     1081 ccattcaagt gcctggaagc aagtttcatt atgtccgact cgtcactgcc acaaccgccg
     1141 gtagctcagc cccaccagtc agtcagagtc ccagtgtcaa cactcagcct cttcagcaag
     1201 caaagccagt ggttgttaat accacgcctg tacggatgtc agttccattt gtccaagctc
     1261 aggccgttaa gcaagttgtt ccaaaaccaa tcaattcaac ttcacaaatt gtaactacta
     1321 gccagcccca gcaacggctc atcatgccgg ccacaccact gcctcagatc cagcccaacc
     1381 tcactaacct gccgccaggc actgtgttgg cgccagctcc aggaacgggg aacgtgggct
     1441 acgcagtgct tccggctcag tacgtcactc agttgcagca gtcctcctac gtgtcgatag
     1501 caggcaactc taacttcacc gggacatcgg gcatccagac acaggcaagg gtttcattca
     1561 acggcataat tccatcagag tctgccagtc ggcccagaaa accctgtaac tgtacaaaat
     1621 cactgtgttt gaaattatac tgtgactgct ttgccaatgg tgaattctgc aacaactgca
     1681 attgtaccaa ttgttacaac aacttagagc atgagaatga gcgacaaaag gcaataaagg
     1741 catgccttga cagaaacccg gaagccttca agccaaagat aggaaaagga aaagaggggg
     1801 agtcggatcg gcggcacagc aaaggctgta actgcaaacg gtcagggtgt cttaaaaact
     1861 actgcgagtg ctatgaggca aaaatcatgt gctcctccat atgcaagtgc atcggctgta
     1921 agaacttcga agaaagccca gaacggaaga cattgatgca cttagcagat gcggctgaag
     1981 taagggtcca gcagcagaca gcagcgaaga ccaagctgtc ctctcagatc tcagacctgc
     2041 ttaccaggcc cacccccgct ctgaacagtg gaggaggaaa attgccattc acatttgtaa
     2101 ctaaagaagt agctgaagcc acgtgtaact gccttcttgc ccaggcagag caggcagaca
     2161 agaaggggaa atcaaaggcg gcagcagagc ggatgatcct ggaggagttt ggacggtgtt
     2221 tgatgagcgt catcaactct gcaggaaaag caaaaagtga cccctgtgcc atgcactgct
     2281 aactgttgca caaaagactg aatggaactg tacaggaaat ttaaggtgcc gggacacttg
     2341 attttctaga agatagttta acaattactg tattttaatt cagcctttgt tttaagagat
     2401 ctgaaactat aatattgaaa gagaagaaat tttaaatgaa gaaattagta cattttaaat
     2461 cttagttaat tctgcctatg ccccttctaa atttttttct ttaaaaattt ttcttttatt
     2521 gtattttata ttttttaatt tgcttgggtt tcttaagaat tagatgttct gtcctgattc
     2581 tattgacaaa gaacattcat aaattattgt aatatcattt ataatatatg gtgttgtatg
     2641 actttgttca gtagaaaagg ccaaagtacc atgggtatta cccagtcttt ggctacagat
     2701 ccagaatatt cacaggtagg atgtccacat aaccagattc ttaatgaaac atatttagaa
     2761 gatattttgt ttagaaaaac accttcttta aagaaaatta gctttttaga gtggattctg
     2821 gaatgttctc tcttgtctct ttgggaatat cagaagggga aacaatcccc atcacacttt
     2881 tcagatataa acattgtatt taaagaaagc agaatcttaa gggacagtag ttgttagcgt
     2941 atgggctgtc tctgaggagg aggaatggct gacatggctc ggggcgtctt cattttctct
     3001 gaaggagatg gtatgttcat aataattgtt aaagtgatta tggctaatta ctaaaataag
     3061 agactgtgtg aattgaagta acattttgtg tcatgatatt agaactcata agcaccaagt
     3121 ataaactgtg gcttggatgg agaagcgagg acacaaaact gaggttatgt atgctgaagc
     3181 ttttatgcac acacttctct gtagaccttt gaactgagtt tgaatcaata tgtgactctt
     3241 acctgggtta ctgcaaagga cctcccagca gcttctaaaa tcatagtgag ctttttataa
     3301 aggagtttaa ttaatgcagc attgtttcta accagtgatt tggtaagctg aagcacgtgt
     3361 gttcctggac tcgcaaaaac aacctaaacc ttcctcagta attaaaactg tatgaccttg
     3421 ggagcctgtt gtaataggac tcgagcttac acaagcagaa aaatatgttg gaattgaggc
     3481 attttgtaag gtaccttaat ccttgataat tactagtgta tgattatacc cttcctacaa
     3541 ggactctcta gttgtatgta gtaagtatgt atatatgttc atatgaacat gaacgatata
     3601 gacaatagaa attaacccaa agaggattcc gttattccct ggagtgtcct ccatttacca
     3661 tggttttatt agatggcagt gctgtgactc ttcatgtaga taatgcagac attctcagca
     3721 cctcagtcta gagtgtttga gtcaactctg tataaatgta aattagtcta agaggacaaa
     3781 ggaatatcta atcaagttat ttttcaaaag actgcaataa gtttttggtc taaacctaaa
     3841 ctttgttcat tttgtatatg ttatgtgtta attctaatcg caccattgtg atgtgtatat
     3901 acagtgtgca caaaatgttt gtgaattttt attatatttg tagattatgt atgatggcat
     3961 tgcataagat tgttttgctt gtaaaaattt gaaggtgcaa tcaaagctac tagttttgat
     4021 ttttaagaag cttttaccgt atccgtccct ttccttctgt gcggttctaa ctgaaggacg
     4081 tttgtgtcag gcatttgcat caaattgctg aacagcgcta acagccacac gaaatcacca
     4141 acttctaacg attatttggg gagggttcgg tctagaattt ttaagcccta tttacatccc
     4201 aaagtagaaa gattatattt actagagcta ttcaaaaaat acacttttct atgttgtgaa
     4261 aacagggcag aagagtaaat catacagaaa taaacattta tactattctg taaaaaaaaa
     4321 aaaaaaaaaa aaaaaaaaaa
//
