LOCUS       NM_001398855             884 bp    mRNA    linear   ROD 28-MAR-2024
DEFINITION  Rattus norvegicus lin-52 DREAM MuvB core complex component (Lin52),
            transcript variant 2, mRNA.
ACCESSION   NM_001398855 XM_039113308
VERSION     NM_001398855.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Dec 27, 2021 this sequence version replaced XM_039113308.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360172.245009.1,
                                           SRR26360190.129645.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-38                JAXUCZ010000006.1  109830249-109830286
            39-113              JAXUCZ010000006.1  109834850-109834924
            114-151             JAXUCZ010000006.1  109836537-109836574
            152-218             JAXUCZ010000006.1  109838481-109838547
            219-302             JAXUCZ010000006.1  109840966-109841049
            303-884             JAXUCZ010000006.1  109924729-109925310
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..884
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /note="lin-52 DREAM MuvB core complex component"
                     /db_xref="GeneID:362763"
                     /db_xref="RGD:1306798"
     exon            1..38
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /inference="alignment:Splign:2.1.0"
     CDS             20..460
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /note="isoform 2 is encoded by transcript variant 2;
                     protein lin-52 homolog"
                     /codon_start=1
                     /product="protein lin-52 homolog isoform 2"
                     /protein_id="NP_001385784.1"
                     /db_xref="GeneID:362763"
                     /db_xref="RGD:1306798"
                     /translation="MASPTDGTDLEASLLSFEKLDRASPDLWPEQLPGVAEFAASFKS
                     PITSSPPTWMAEIERDDIDMLKELGSLTTANLMEKVRGLQNLAYQLGLDECSSRCFQL
                     SVDSHQQSTPAGAGSLLPLLDFELHAKRKIDAPDTWPLLRGAFF"
     exon            39..113
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /inference="alignment:Splign:2.1.0"
     exon            114..151
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /inference="alignment:Splign:2.1.0"
     exon            152..218
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /inference="alignment:Splign:2.1.0"
     exon            219..302
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /inference="alignment:Splign:2.1.0"
     exon            303..884
                     /gene="Lin52"
                     /gene_synonym="RGD1306798"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 acgtgacatg ggctggaaga tggcgtctcc cacagacggg acagatttgg aagcatcgtt
       61 gctaagtttt gagaaacttg accgtgcctc gccagatctt tggcccgaac agttaccagg
      121 tgttgctgaa tttgcagctt ctttcaaaag tcccatcaca agctctccac caacatggat
      181 ggctgaaata gaacgggatg acattgatat gttgaaagaa ctggggagtc tcaccacagc
      241 taatctgatg gagaaggtac gaggcctaca gaacctggcc taccagctgg ggctggatga
      301 gtgttcttcc agatgcttcc agctctcagt agatagccat cagcagtcca caccggcagg
      361 cgctggctcc ctcctccctc tgctggactt tgagctgcac gccaagagaa agatagatgc
      421 tcctgatacg tggccgctgc ttagaggtgc tttcttttaa catttaaccg gcatacagct
      481 gaaggaaaga tggtctcctg atggatgctg tcagcaatgc ttaagaggaa aagcctttct
      541 agtacctctc ccctcggatg ccgtgaaggg ttcgggcatc accggacagg gtcccagccc
      601 aggctctaag tctgatccaa gccgaggtgc ctgcgccatg ctatgcgctc catcaccacg
      661 agagggagcg acgagcgggc tcttcccaat gctgtcctcc acagccttgc ctaggtaaga
      721 aggtccctcg gcatcaaagt gggaggtccg catcaaacta tgagaagggc aaattggaaa
      781 gacggtcaat ggtgcggtgg gtaggggaca agtgaggtca tggaaggatg tatatggtta
      841 tatatatatc tcacataata aaagccatta ttttgtataa ttga
//
