LOCUS       XM_039099151            5679 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lin-28 homolog B (Lin28b), transcript
            variant X2, mRNA.
ACCESSION   XM_039099151
VERSION     XM_039099151.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5679
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5679
                     /gene="Lin28b"
                     /note="lin-28 homolog B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 2 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:689054"
                     /db_xref="RGD:1597432"
     CDS             592..1407
                     /gene="Lin28b"
                     /codon_start=1
                     /product="protein lin-28 homolog B isoform X2"
                     /protein_id="XP_038955079.1"
                     /db_xref="GeneID:689054"
                     /db_xref="RGD:1597432"
                     /translation="MAEGGAGKGEEPEKLPELAEDESQVLRGTGHCKWFNVRMGFGFI
                     SMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKGLESIRVTGPGG
                     NPCLGSERRPKGKTLQKRKPKADRWRRQDLLMDQMWTVREEESRMIPRCYNCGGLDHH
                     AKECGLPPQPKKCHYCQSIMHMVANCPHKLVAQLPASAQGRPEAESQPCTSPSPREVG
                     GGHGCTVPFPQEVTSEMAEQSDRSPQEVSATKAFAAIGEQNKKGPLIQKRKKT"
ORIGIN      
        1 tgaatggaag gttcaatctc gcgcgctcgg cgcgggcagc caatgacgcg gctcggagcg
       61 gcggcgggca ggtgtggtgt gcgcgagcct ccgcctgacg cagggctcgg gtcgagccgc
      121 ttgggccccc cacgccgccc gggtaccccc tggcactccg cgtgcacggc cctccggctc
      181 gcgatgtgcc ggccctcgcg gcccggctcc gtcaggaagt gacaggctcg cgggcgccgc
      241 cgccctctct ctcaccgccg ccggcgctcg gggccgcagg accatgaggc cgcggaggtt
      301 cttcagaaga tgatgaggtc actcaaccag ggttcatcag ccccagcccc ttaaggatcc
      361 gaggtgaatt agtagcaaga aagcatgtaa ttgacagagt cacgtgtgct caggggccag
      421 aaaccggaga gagaagagga aaaaaatcaa aagaaggaaa gcacattaga ccatgcgaac
      481 taaatttgtg atcacacaaa atcaagatgt tagactgatg ctgaagatca ctccgctcca
      541 aagggaaagt tttcatctct ggagtttgaa gctgagggcc ggtggggcaa catggccgaa
      601 ggcggggcag gcaaaggtga agagccggag aaactgcctg agctggcgga ggacgagtcc
      661 caggtcctgc gtggaactgg ccactgtaaa tggttcaacg tgcgcatggg attcggcttc
      721 atctccatga taagtcggga gggaaacccc ttggatattc cagtcgatgt atttgtacac
      781 caaagcaaac tattcatgga aggatttaga agcttgaaag aaggagagcc agtggaattt
      841 acatttaaaa aatcccccaa aggccttgag tcaatacggg taacaggccc aggtgggaac
      901 ccctgcttag gaagtgaacg aagacctaaa gggaagacgc tgcagaagag aaaaccaaag
      961 gcagataggt ggagacggca ggatttgctg atggatcaga tgtggactgt gagagaagaa
     1021 gagtccagga tgattccaag atgctacaac tgcggtggtc tcgaccatca tgctaaagaa
     1081 tgcggtctac ctcctcagcc aaagaagtgc cattactgcc agagcatcat gcacatggtg
     1141 gccaactgcc cgcacaagct tgtcgctcag ctgcccgcct cggctcaggg aagaccagag
     1201 gcagagtccc agccatgcac ttccccctca cccagagaag tgggaggggg gcacggctgc
     1261 acagtaccgt ttcctcagga ggtgacgtca gaaatggcgg agcagtcaga cagatcaccc
     1321 caagaagttt ctgccacgaa agcatttgca gcaataggag agcaaaacaa aaaggggcct
     1381 ttgattcaga aacggaaaaa gacttagtat tgtcagtgtt ctcttcaccc ggctggggag
     1441 tctacctcat gcaagcacag gggaatagtg ttccacagag agcagccgac cgggggtttt
     1501 aactactgct gaggaactct gatgttctta attagacaaa tcactcttaa gcaaatctca
     1561 tttaagcagg gtgtcatgtt ttgtagaatt gagatgctac atatagtatg tgcatgagtg
     1621 agcggggaaa cccgaatctg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     1681 tgtgtagata gaagcacata ctcttcctca gatagttggg catctccaag cattgaaaat
     1741 ccatgtgaaa catttgagat ggtttcagag ttaatccttg gaatttttcc taaatactac
     1801 ttcttttata ttatgtaaac aaacaaacca cgtgactgtt acctttcatg tgaaccaaag
     1861 cttacttcag atctcagagc tgccagtcag gtgccactca cggcttttgg gatacttggt
     1921 gcctcccaag tgagtattca caactcccat gacgcagacg gagtgtctgt gctgtagtaa
     1981 cttaactcta gatgcttctg actgccagac cctttaattg ctgaatagga cagtgaatgt
     2041 gacgtctctg tgctgagctt ccagtgtcct ctgttctgtt ttgattgtaa attacatgcc
     2101 tattaagaaa agcggagggg agggtaatgt gtatagtaat gtgatcctgt tcagtggtgt
     2161 ttccatacta ggtctttaca agtgctctga ggtctttaag ggactgtggc aacagaagct
     2221 ccctttgact acgtagctgt tgaaccatca cttagaacaa gaaggtctct tacttactac
     2281 tgaagcctta gagaaaaact ctattatttg ggtatatttt agtagctgtt tttatttccc
     2341 atcaagagtc ctcagacctg tttctgaaac aaacaaacgc agcatagaaa taaaatggtg
     2401 gggcttaaag tgaaaatgaa gttgccccaa tagatggagc ccagcactga cactcaaaag
     2461 gatagtgtag tggcaggcag acagagtgat gggcctggag tagagttcca aatcgcccag
     2521 tgttatgtgg ctagaaatac tgtaggtgtt agcattgatg ccgtgcagct cgttgagtac
     2581 agaggctgag gtagcctatg tgacaggctc aggacgagca cccaggctag tcaccagaat
     2641 cttctctgac ggattctcag tttgcccaga ctgctaggca ctgaccgtgg tattggctgt
     2701 tttctatcat gttttgtttt gttttttaat ggagtcagct ggttctaaat gtgatgagca
     2761 aacttctgaa gcatcttcaa gaaggtacca aggaattgca gtgcatagtt ttggctgtag
     2821 ctccatgggc ctgttggtat aagctcagat aatcaaacaa gaaagcattg tgactcatag
     2881 gagacacatt ctacggagga gtcccttcct ccggtgtgtg ttgtgggagg tgggtgacgc
     2941 taaggttcca tcaagctgct agaggaggaa actgtctgtg actagcttgc cagtcctttc
     3001 cagagtagct tgaatttctt gacagtattt atgagaattc ccatagtgtt ttactgaagt
     3061 atcggtgtgc tgtaatacag tgcttacctt tgacgatatt gaatgtgatg tagccataga
     3121 gaagtgctgc cttgccttat gtgaggactc aagcttgttt aagttatgca gacgaatcag
     3181 agtgtcaccc aagtacaatg aacaaggtaa cggttgtaca agtaaaatat gataggccac
     3241 tttgagcgtt caaaccaaag ttgcttgact gtaaaactag gaaatagtgg acttgaaaat
     3301 tagacatcct gtttacatat aaaactcaga actgaggcca ttttaaaaat gaaagtagaa
     3361 aattcagaaa cacttgaact atagaactta tgggtgtggt tgacttcttt ttcggcatct
     3421 gaccagactg aattactaaa agcacatacc aaacctctta cggttaaaag ttggggttta
     3481 tttttatatg aaaatattgt cactattaca tgctcaggac aaagaacttt gctcagggaa
     3541 cataccatat aatgttttta ttggtttttg atgttttttt tttgtttttt ttttttgttt
     3601 tgtttttttt acagattagt ctataatcct gctttctcag aacaagccaa atagcttaag
     3661 tctttatgta ggtacatgtg cttgttagta actacctctg agtgacattg gtcataattc
     3721 tgaatgtcag atattggtct tttttttttg tttcatgtca aagtcttgta aagcaaactt
     3781 ccactccctg cagatgtgaa ttcatacaag tgagacactc tgtttacagc aaacagctac
     3841 ctcctagcca ctacatagca cagctcgatg ctgctgcagc cttacgggtc gctgataatc
     3901 ctctggtaca gacaccttta atctgtagca cagagaggca tttgcaaccc cgtgtttctg
     3961 aaaaatgcct gtttctctca tggacttccc atgttaggta gcaaagtctc caggcatttc
     4021 cttaaagtta tcatgtattg aatttaagga agaatgggca ctcttaatcc taagcaaaac
     4081 agaacacaga aacaatcttg agaatagctc tgttacctag aggcgagggg caggagaggt
     4141 aacaaaagca aacttggtgt ttgtagtttg ctgacaagtg ttataaaaga ttcctacccg
     4201 cttcacttgc ctctactgta ccgtgtgcag agcgtgaacg cactgcagca ggccacgccg
     4261 caggcacatg accagcacag cttgccaagg gggcacgtaa agtgcagtgc tgctttgagc
     4321 cgggggaaag gagcaccact ttgcagggct tcttaatagt gggcgtatgg cccgtgggtc
     4381 aagccacctt ttgacctccc cctcgtatca acacaaatat aattcctaaa aatgattcac
     4441 taccagcctt tagcctgcga actattcatt gtctacacag caggtcacag tggagacgtt
     4501 tttatacttg catttctagt cttcggatgt atttttacaa atgaaagatt taggaagatt
     4561 tttatctact tataacttgg aaattttagt gtgcaatcta aagaaaagtt gaagacgtac
     4621 attgttggcc tcagtccacc tcccaaacag agggtgcttt tattaccagt tatttttgta
     4681 ttcggactga gatttacttt gctccagtgc gggcctaact tgtgctggtg catgtagttt
     4741 gtgcatagaa gtccgtaagt gttagtagac cttgtaacat tcgctgtaag atgaattatt
     4801 caggatgtgg ggaatctcat taagtcttaa agttaattta aattaattta tctgtttttt
     4861 ctaagaaatg tttatcataa atatatatgt catttcccat tttggtataa aatctaggga
     4921 aatgcatgca agtggagttg tgctgacttt aattttctag atgtcttaat gagacttatt
     4981 tgtttttgaa aaagaacaac ttattgaaaa catccagttc tgtcttacat acatactgtc
     5041 aacagcctct tcaagatgtg cctgtgtgat ctgtgaccta ctgttcattt aaaatgagac
     5101 ggtgacctat gatactcatt gttgatctta cacttggaac tgaattatgg cagcattatg
     5161 gtgaagtcct gtactgtgag aaagtatcca gatatgcaac tcctgtggct taccccttga
     5221 cggtccctgc ttgaaaatga tggcgttgac tacctcctta atcactctga ctatcaccca
     5281 cagcacctag caccagactg gctttaatca gtgtgtgctg tgtttgtggt ggtaacgact
     5341 ctatccatat aaagaccaaa gtgaacctgg tttctatatg tctttaatac tgtgttttat
     5401 ctggtgtttg aaagttatct tatgtagtgt ttagcttccc tcactccatt ttgattcatg
     5461 tttacaagtg acaacttttt aaaaataccc ttgaacttgc gttggaaaga acaaaagagg
     5521 agttgttact agactggcac actgcattcc gtcacctcgg tggactattt tttcctctgc
     5581 agacatgggc ctggtgttgt cttttcgtac caaacgtctt actctgttgg ctattgatgt
     5641 tctgaagttt aaaataaaag atgcaatgtt ggtgtttaa
//
