LOCUS       XM_039099150            5424 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lin-28 homolog B (Lin28b), transcript
            variant X1, mRNA.
ACCESSION   XM_039099150
VERSION     XM_039099150.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051355.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039099150.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5424
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5424
                     /gene="Lin28b"
                     /note="lin-28 homolog B; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 1 Protein, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 6 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:689054"
                     /db_xref="RGD:1597432"
     CDS             310..1152
                     /gene="Lin28b"
                     /codon_start=1
                     /product="protein lin-28 homolog B isoform X1"
                     /protein_id="XP_038955078.1"
                     /db_xref="GeneID:689054"
                     /db_xref="RGD:1597432"
                     /translation="MMRSLNQGSSAPGGAGKGEEPEKLPELAEDESQVLRGTGHCKWF
                     NVRMGFGFISMISREGNPLDIPVDVFVHQSKLFMEGFRSLKEGEPVEFTFKKSPKGLE
                     SIRVTGPGGNPCLGSERRPKGKTLQKRKPKADRWRRQDLLMDQMWTVREEESRMIPRC
                     YNCGGLDHHAKECGLPPQPKKCHYCQSIMHMVANCPHKLVAQLPASAQGRPEAESQPC
                     TSPSPREVGGGHGCTVPFPQEVTSEMAEQSDRSPQEVSATKAFAAIGEQNKKGPLIQK
                     RKKT"
ORIGIN      
        1 tgaatggaag gttcaatctc gcgcgctcgg cgcgggcagc caatgacgcg gctcggagcg
       61 gcggcgggca ggtgtggtgt gcgcgagcct ccgcctgacg cagggctcgg gtcgagccgc
      121 ttgggccccc cacgccgccc gggtaccccc tggcactccg cgtgcacggc cctccggctc
      181 gcgatgtgcc ggccctcgcg gcccggctcc gtcaggaagt gacaggctcg cgggcgccgc
      241 cgccctctct ctcaccgccg ccggcgctcg gggccgcagg accatgaggc cgcggaggtt
      301 cttcagaaga tgatgaggtc actcaaccag ggttcatcag ccccaggcgg ggcaggcaaa
      361 ggtgaagagc cggagaaact gcctgagctg gcggaggacg agtcccaggt cctgcgtgga
      421 actggccact gtaaatggtt caacgtgcgc atgggattcg gcttcatctc catgataagt
      481 cgggagggaa accccttgga tattccagtc gatgtatttg tacaccaaag caaactattc
      541 atggaaggat ttagaagctt gaaagaagga gagccagtgg aatttacatt taaaaaatcc
      601 cccaaaggcc ttgagtcaat acgggtaaca ggcccaggtg ggaacccctg cttaggaagt
      661 gaacgaagac ctaaagggaa gacgctgcag aagagaaaac caaaggcaga taggtggaga
      721 cggcaggatt tgctgatgga tcagatgtgg actgtgagag aagaagagtc caggatgatt
      781 ccaagatgct acaactgcgg tggtctcgac catcatgcta aagaatgcgg tctacctcct
      841 cagccaaaga agtgccatta ctgccagagc atcatgcaca tggtggccaa ctgcccgcac
      901 aagcttgtcg ctcagctgcc cgcctcggct cagggaagac cagaggcaga gtcccagcca
      961 tgcacttccc cctcacccag agaagtggga ggggggcacg gctgcacagt accgtttcct
     1021 caggaggtga cgtcagaaat ggcggagcag tcagacagat caccccaaga agtttctgcc
     1081 acgaaagcat ttgcagcaat aggagagcaa aacaaaaagg ggcctttgat tcagaaacgg
     1141 aaaaagactt agtattgtca gtgttctctt cacccggctg gggagtctac ctcatgcaag
     1201 cacaggggaa tagtgttcca cagagagcag ccgaccgggg gttttaacta ctgctgagga
     1261 actctgatgt tcttaattag acaaatcact cttaagcaaa tctcatttaa gcagggtgtc
     1321 atgttttgta gaattgagat gctacatata gtatgtgcat gagtgagcgg ggaaacccga
     1381 atctgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt gtgtgtgtgt agatagaagc
     1441 acatactctt cctcagatag ttgggcatct ccaagcattg aaaatccatg tgaaacattt
     1501 gagatggttt cagagttaat ccttggaatt tttcctaaat actacttctt ttatattatg
     1561 taaacaaaca aaccacgtga ctgttacctt tcatgtgaac caaagcttac ttcagatctc
     1621 agagctgcca gtcaggtgcc actcacggct tttgggatac ttggtgcctc ccaagtgagt
     1681 attcacaact cccatgacgc agacggagtg tctgtgctgt agtaacttaa ctctagatgc
     1741 ttctgactgc cagacccttt aattgctgaa taggacagtg aatgtgacgt ctctgtgctg
     1801 agcttccagt gtcctctgtt ctgttttgat tgtaaattac atgcctatta agaaaagcgg
     1861 aggggagggt aatgtgtata gtaatgtgat cctgttcagt ggtgtttcca tactaggtct
     1921 ttacaagtgc tctgaggtct ttaagggact gtggcaacag aagctccctt tgactacgta
     1981 gctgttgaac catcacttag aacaagaagg tctcttactt actactgaag ccttagagaa
     2041 aaactctatt atttgggtat attttagtag ctgtttttat ttcccatcaa gagtcctcag
     2101 acctgtttct gaaacaaaca aacgcagcat agaaataaaa tggtggggct taaagtgaaa
     2161 atgaagttgc cccaatagat ggagcccagc actgacactc aaaaggatag tgtagtggca
     2221 ggcagacaga gtgatgggcc tggagtagag ttccaaatcg cccagtgtta tgtggctaga
     2281 aatactgtag gtgttagcat tgatgccgtg cagctcgttg agtacagagg ctgaggtagc
     2341 ctatgtgaca ggctcaggac gagcacccag gctagtcacc agaatcttct ctgacggatt
     2401 ctcagtttgc ccagactgct aggcactgac cgtggtattg gctgttttct atcatgtttt
     2461 gttttgtttt ttaatggagt cagctggttc taaatgtgat gagcaaactt ctgaagcatc
     2521 ttcaagaagg taccaaggaa ttgcagtgca tagttttggc tgtagctcca tgggcctgtt
     2581 ggtataagct cagataatca aacaagaaag cattgtgact cataggagac acattctacg
     2641 gaggagtccc ttcctccggt gtgtgttgtg ggaggtgggt gacgctaagg ttccatcaag
     2701 ctgctagagg aggaaactgt ctgtgactag cttgccagtc ctttccagag tagcttgaat
     2761 ttcttgacag tatttatgag aattcccata gtgttttact gaagtatcgg tgtgctgtaa
     2821 tacagtgctt acctttgacg atattgaatg tgatgtagcc atagagaagt gctgccttgc
     2881 cttatgtgag gactcaagct tgtttaagtt atgcagacga atcagagtgt cacccaagta
     2941 caatgaacaa ggtaacggtt gtacaagtaa aatatgatag gccactttga gcgttcaaac
     3001 caaagttgct tgactgtaaa actaggaaat agtggacttg aaaattagac atcctgttta
     3061 catataaaac tcagaactga ggccatttta aaaatgaaag tagaaaattc agaaacactt
     3121 gaactataga acttatgggt gtggttgact tctttttcgg catctgacca gactgaatta
     3181 ctaaaagcac ataccaaacc tcttacggtt aaaagttggg gtttattttt atatgaaaat
     3241 attgtcacta ttacatgctc aggacaaaga actttgctca gggaacatac catataatgt
     3301 ttttattggt ttttgatgtt ttttttttgt tttttttttt tgttttgttt tttttacaga
     3361 ttagtctata atcctgcttt ctcagaacaa gccaaatagc ttaagtcttt atgtaggtac
     3421 atgtgcttgt tagtaactac ctctgagtga cattggtcat aattctgaat gtcagatatt
     3481 ggtctttttt ttttgtttca tgtcaaagtc ttgtaaagca aacttccact ccctgcagat
     3541 gtgaattcat acaagtgaga cactctgttt acagcaaaca gctacctcct agccactaca
     3601 tagcacagct cgatgctgct gcagccttac gggtcgctga taatcctctg gtacagacac
     3661 ctttaatctg tagcacagag aggcatttgc aaccccgtgt ttctgaaaaa tgcctgtttc
     3721 tctcatggac ttcccatgtt aggtagcaaa gtctccaggc atttccttaa agttatcatg
     3781 tattgaattt aaggaagaat gggcactctt aatcctaagc aaaacagaac acagaaacaa
     3841 tcttgagaat agctctgtta cctagaggcg aggggcagga gaggtaacaa aagcaaactt
     3901 ggtgtttgta gtttgctgac aagtgttata aaagattcct acccgcttca cttgcctcta
     3961 ctgtaccgtg tgcagagcgt gaacgcactg cagcaggcca cgccgcaggc acatgaccag
     4021 cacagcttgc caagggggca cgtaaagtgc agtgctgctt tgagccgggg gaaaggagca
     4081 ccactttgca gggcttctta atagtgggcg tatggcccgt gggtcaagcc accttttgac
     4141 ctccccctcg tatcaacaca aatataattc ctaaaaatga ttcactacca gcctttagcc
     4201 tgcgaactat tcattgtcta cacagcaggt cacagtggag acgtttttat acttgcattt
     4261 ctagtcttcg gatgtatttt tacaaatgaa agatttagga agatttttat ctacttataa
     4321 cttggaaatt ttagtgtgca atctaaagaa aagttgaaga cgtacattgt tggcctcagt
     4381 ccacctccca aacagagggt gcttttatta ccagttattt ttgtattcgg actgagattt
     4441 actttgctcc agtgcgggcc taacttgtgc tggtgcatgt agtttgtgca tagaagtccg
     4501 taagtgttag tagaccttgt aacattcgct gtaagatgaa ttattcagga tgtggggaat
     4561 ctcattaagt cttaaagtta atttaaatta atttatctgt tttttctaag aaatgtttat
     4621 cataaatata tatgtcattt cccattttgg tataaaatct agggaaatgc atgcaagtgg
     4681 agttgtgctg actttaattt tctagatgtc ttaatgagac ttatttgttt ttgaaaaaga
     4741 acaacttatt gaaaacatcc agttctgtct tacatacata ctgtcaacag cctcttcaag
     4801 atgtgcctgt gtgatctgtg acctactgtt catttaaaat gagacggtga cctatgatac
     4861 tcattgttga tcttacactt ggaactgaat tatggcagca ttatggtgaa gtcctgtact
     4921 gtgagaaagt atccagatat gcaactcctg tggcttaccc cttgacggtc cctgcttgaa
     4981 aatgatggcg ttgactacct ccttaatcac tctgactatc acccacagca cctagcacca
     5041 gactggcttt aatcagtgtg tgctgtgttt gtggtggtaa cgactctatc catataaaga
     5101 ccaaagtgaa cctggtttct atatgtcttt aatactgtgt tttatctggt gtttgaaagt
     5161 tatcttatgt agtgtttagc ttccctcact ccattttgat tcatgtttac aagtgacaac
     5221 tttttaaaaa tacccttgaa cttgcgttgg aaagaacaaa agaggagttg ttactagact
     5281 ggcacactgc attccgtcac ctcggtggac tattttttcc tctgcagaca tgggcctggt
     5341 gttgtctttt cgtaccaaac gtcttactct gttggctatt gatgttctga agtttaaaat
     5401 aaaagatgca atgttggtgt ttaa
//
