LOCUS       XP_038955078             280 aa            linear   ROD 22-FEB-2024
DEFINITION  protein lin-28 homolog B isoform X1 [Rattus norvegicus].
ACCESSION   XP_038955078
VERSION     XP_038955078.1
DBLINK      BioProject: PRJNA1074393
DBSOURCE    REFSEQ: accession XM_039099150.2
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086038) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Rattus norvegicus"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="20"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     Protein         1..280
                     /product="protein lin-28 homolog B isoform X1"
                     /calculated_mol_wt=30876
     Region          38..108
                     /region_name="CSP_CDS"
                     /note="Cold-Shock Protein (CSP) contains an S1-like
                     cold-shock domain (CSD) that is found in eukaryotes,
                     prokaryotes, and archaea. CSP's include the major
                     cold-shock proteins CspA and CspB in bacteria and the
                     eukaryotic gene regulatory factor Y-box protein; cd04458"
                     /db_xref="CDD:239905"
     Site            order(43,52,70,99)
                     /site_type="DNA binding"
                     /note="DNA-binding site [nucleotide binding]"
                     /db_xref="CDD:239905"
     Site            order(49..53,61..62,69..72)
                     /site_type="active"
                     /note="RNA-binding motif [active]"
                     /db_xref="CDD:239905"
     Region          <160..196
                     /region_name="PTZ00368"
                     /note="universal minicircle sequence binding protein
                     (UMSBP); Provisional"
                     /db_xref="CDD:173561"
     CDS             1..280
                     /gene="Lin28b"
                     /coded_by="XM_039099150.2:314..1156"
                     /db_xref="GeneID:689054"
                     /db_xref="RGD:1597432"
ORIGIN      
        1 mmrslnqgss apggagkgee peklpelaed esqvlrgtgh ckwfnvrmgf gfismisreg
       61 npldipvdvf vhqsklfmeg frslkegepv eftfkkspkg lesirvtgpg gnpclgserr
      121 pkgktlqkrk pkadrwrrqd llmdqmwtvr eeesrmiprc yncggldhha kecglppqpk
      181 kchycqsimh mvancphklv aqlpasaqgr peaesqpcts psprevgggh gctvpfpqev
      241 tsemaeqsdr spqevsatka faaigeqnkk gpliqkrkkt
//
