LOCUS       XM_039110616            1122 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus lin-28 homolog A (Lin28a), transcript
            variant X1, mRNA.
ACCESSION   XM_039110616
VERSION     XM_039110616.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1122
                     /gene="Lin28a"
                     /gene_synonym="Lin28; RGD1566408"
                     /note="lin-28 homolog A; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1 EST,
                     1 Protein, and 89% coverage of the annotated genomic
                     feature by RNAseq alignments, including 40 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:500562"
                     /db_xref="RGD:1566408"
     CDS             304..837
                     /gene="Lin28a"
                     /gene_synonym="Lin28; RGD1566408"
                     /codon_start=1
                     /product="protein lin-28 homolog A isoform X1"
                     /protein_id="XP_038966544.1"
                     /db_xref="GeneID:500562"
                     /db_xref="RGD:1566408"
                     /translation="MGFGFLSMTARAGVALDPPVDVFVHQSKLHMEGFRSLKEGEAVE
                     FTFKKSAKGLESIRVTGPGGVFCIGSERRPKGKSMQKRRSKGDRYGQEGSATRLPLRS
                     HCQRCYNCGGLDHHAKECKLPPQPKKCHFCQSISHMVASCPLKAQQGPSSQGKPVYFR
                     EEEEEIHSPTLLPEAQN"
ORIGIN      
        1 ttagcatcct cggtgtaagc ttggggaggc agctaggaca ggtttcttct taccagccgc
       61 ttggtagctg cttcctcctg ggtgtctatc cgcgggctga ccaccgagat ctcccagacg
      121 ggtccctgag agggcctgcg attccttggt ccccagctga tcacctggcc ctccctatct
      181 ccaggtggct gcgccaaggc agcggagaag gcgccagaag aggcgccggc tgacgcggcc
      241 cgagcggcag acgagccgca gctgctgcac ggggccggca tctgtaagtg gttcaacgtg
      301 cgcatggggt tcggcttcct gtctatgacc gcccgtgccg gggtcgcgct cgaccccccg
      361 gtggacgtct ttgtgcacca gagcaagctg cacatggaag gtttccgaag cctcaaggag
      421 ggtgaggcag tggagttcac ctttaagaag tctgccaagg gtctagagtc catccgcgtc
      481 actggccctg gtggcgtgtt ctgtattggg agtgagcgac ggccaaaggg gaagagcatg
      541 cagaaacgaa gatccaaagg agacaggtac ggccaggagg ggagcgccac tcgactgcca
      601 ctgagatccc attgccaaag gtgctacaac tgtggtgggc tagaccacca tgccaaggaa
      661 tgcaagctgc caccccagcc caagaagtgc cacttttgcc aaagcatcag ccatatggtg
      721 gcctcatgtc cactgaaggc ccagcagggc cccagttctc agggaaaacc tgtctacttc
      781 cgggaggagg aagaagagat ccacagccct accctgctcc cagaagccca gaattgaggc
      841 ccaggagtag gggttattct ttggctaatg gggagtttca gggaggaggc atcaatccgc
      901 agagtggaga aagtgggaat cgggtgggtt gcgtgggtag cttgcactgt catatgacat
      961 ctcaggccgg ggttcccagt gtcaccctgt ctttccttgg agggaaggaa agggtgaggc
     1021 aaaggaactc ctaccacgct ccatctagaa gcaagtgaaa gcttttgtgg ggaaccaccc
     1081 tagaatctgc atgctttatc tgaggctcta atgggctctg ct
//
