LOCUS       NM_001108614            1888 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus Lck interacting transmembrane adaptor 1 (Lime1),
            mRNA.
ACCESSION   NM_001108614 XM_001057612 XM_342603
VERSION     NM_001108614.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1888)
  AUTHORS   Bohm,D., Keller,K., Pieter,J., Boehm,N., Wolters,D., Siggelkow,W.,
            Lebrecht,A., Schmidt,M., Kolbl,H., Pfeiffer,N. and Grus,F.H.
  TITLE     Comparison of tear protein levels in breast cancer patients and
            healthy controls using a de novo proteomic approach
  JOURNAL   Oncol Rep 28 (2), 429-438 (2012)
   PUBMED   22664934
REFERENCE   2  (bases 1 to 1888)
  AUTHORS   Ahn,E., Lee,H. and Yun,Y.
  TITLE     LIME acts as a transmembrane adapter mediating BCR-dependent B-cell
            activation
  JOURNAL   Blood 107 (4), 1521-1527 (2006)
   PUBMED   16249387
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH474066.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_342603.3, XM_001057612.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1888
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q43"
     gene            1..1888
                     /gene="Lime1"
                     /gene_synonym="RGD1562795"
                     /note="Lck interacting transmembrane adaptor 1"
                     /db_xref="GeneID:362289"
                     /db_xref="RGD:1562795"
     exon            1..1036
                     /gene="Lime1"
                     /gene_synonym="RGD1562795"
                     /inference="alignment:Splign:2.1.0"
     CDS             939..1748
                     /gene="Lime1"
                     /gene_synonym="RGD1562795"
                     /codon_start=1
                     /product="lck-interacting transmembrane adapter 1"
                     /protein_id="NP_001102084.1"
                     /db_xref="GeneID:362289"
                     /db_xref="RGD:1562795"
                     /translation="MRPPVPSAPLALWVLGCFSLLLWLWALCTACHRKRAQRQQTGLQ
                     GSLMPVEVPLLRQAHLCSLSKSDTRLHELHRGQRSTIAPRPASMDLLHPRWLELSRGS
                     TRSQVPNSAFPPRQLPRAPPAAPATPPSTSPEATYSNVGLAAIPRASLAASPVVWPGR
                     QLTISCTRLGPGAEYACIQKHKGTEQGCQESQQKAKVTPATQMDVLYSRVCKPKRRDP
                     RPDTDQLNLQDGRTILALGNDVKYEAITLRGQDMKQGTLENVYESIKEMGL"
     exon            1037..1094
                     /gene="Lime1"
                     /gene_synonym="RGD1562795"
                     /inference="alignment:Splign:2.1.0"
     exon            1095..1182
                     /gene="Lime1"
                     /gene_synonym="RGD1562795"
                     /inference="alignment:Splign:2.1.0"
     exon            1183..1544
                     /gene="Lime1"
                     /gene_synonym="RGD1562795"
                     /inference="alignment:Splign:2.1.0"
     exon            1545..1888
                     /gene="Lime1"
                     /gene_synonym="RGD1562795"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaggcgagca gaggctgtgg gagcagctgc gcaggagctg tgtggctgct gggaggtgct
       61 gagaaacaca ggaagtgagg tgaggcgtca ccagcagccc acaaagacct tcctggctgc
      121 cctagacagg gccaagcagc aaacccccgg tggccttggt aagtgctccc ccatcctcta
      181 tcctgggcca gtccccaacc tctccatgcc ctggggtctg ggagggttag tccctgcctg
      241 gctaggcctt tgataacttg gctgtagcca agttagtcag cttgggccca ctctgtataa
      301 gaagcctata ctccaggcct ggacaggcag gccctcaccc tgattttatt caccctgaac
      361 tcatgggcaa gaccctaatc agctctacta agggcaactc caggaaaggc aggaaccctg
      421 ggaagggaag agtggggtgg gagtacatgg ccctcatagc agctcccctg ttcattgacc
      481 cccaactgct taacttgcgt tgtgagtaat ctaggaacag tgcttgacac aaggggtcac
      541 tccttgggca ttggtggcca gaggtgagat ctgtggtctg tggctcaacg tcagtgatgt
      601 cagagacttc cccaggtgat gggcttgagc tagagatgca gctttgttca gtgaggtcat
      661 aactcctggc cgtgctcctg catctccact cctgataact aaaggggtag gcagagccct
      721 tctcactagg atccttagct agagaaggaa ggtgggtccc cagggcaggg caaaaatgca
      781 aggctggggg tttccggtgt gctgagtcaa ccagggagaa ggaacccact gctgggccag
      841 atctgcaagt aggctgcagc tgtacactgg tcccacagcc agccagcccc cagtgctcat
      901 ctcttctgtc cccaggtctc ccttccctgc ttgacaggat gaggccacca gtgccttcag
      961 ccccactagc tctctgggtc ctgggctgct tctccctgct cctttggcta tgggcactgt
     1021 gcacagcctg ccacaggaag agagctcaga ggcagcaaac tgggctgcag ggcagtttga
     1081 tgccagtgga agtgccactg ctgagacagg cccacctctg ctccctcagc aagtctgaca
     1141 ccagactgca tgagctgcac cgaggccaac gctccaccat agccccacgg cctgctagca
     1201 tggatcttct gcatccacgc tggctagagt tatccagggg cagcaccagg tctcaggtac
     1261 ccaactctgc cttcccacca cggcaactgc ccagggcccc tcctgctgcc cctgcaactc
     1321 cgccttctac tagccctgag gccacttact ccaatgtggg gctggctgca attcccaggg
     1381 ccagcctggc tgctagccct gtggtgtggc ctggaagaca gctgaccatt agctgtacca
     1441 ggcttggtcc tggggccgag tatgcctgca tccagaagca caaagggaca gagcagggct
     1501 gccaagaatc acaacagaag gctaaggtga ccccagctac tcagatggat gtcttatact
     1561 ctagggtctg caagcctaaa agaagagacc caagacctga cacagaccag ctgaacctcc
     1621 aggatgggag aacaattctg gcccttggga atgatgtgaa atatgaggct atcactctca
     1681 ggggccagga tatgaagcaa ggaaccttag aaaatgtata tgaaagcatc aaggagatgg
     1741 gcctctgagc agctgagccc tcacctcctg tctgcttctg cttcaggagg gtttgatgtg
     1801 caggtccttc tgtgtccttc acctccacag ctgacagcac aaagctcagg tccagtcctt
     1861 gtggcctaat taaatctctg ttcagtaa
//
