LOCUS       NM_181367               1298 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus LIM homeobox 9 (Lhx9), mRNA.
ACCESSION   NM_181367 XM_001066548
VERSION     NM_181367.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1298)
  AUTHORS   Molle,B., Pere,S., Failli,V., Bach,I. and Retaux,S.
  TITLE     Lhx9 and lhx9alpha: differential biochemical properties and effects
            on neuronal differentiation
  JOURNAL   DNA Cell Biol 23 (11), 761-768 (2004)
   PUBMED   15585134
  REMARK    GeneRIF: Lhx9 and Lhx9alpha isoforms could be implicated in
            regulating various aspects of neuronal differentiation
REFERENCE   2  (bases 1 to 1298)
  AUTHORS   Mazaud,S., Oreal,E., Guigon,C.J., Carre-Eusebe,D. and Magre,S.
  TITLE     Lhx9 expression during gonadal morphogenesis as related to the
            state of cell differentiation
  JOURNAL   Gene Expr Patterns 2 (3-4), 373-377 (2002)
   PUBMED   12617828
REFERENCE   3  (bases 1 to 1298)
  AUTHORS   Birk,O.S., Casiano,D.E., Wassif,C.A., Cogliati,T., Zhao,L.,
            Zhao,Y., Grinberg,A., Huang,S., Kreidberg,J.A., Parker,K.L.,
            Porter,F.D. and Westphal,H.
  TITLE     The LIM homeobox gene Lhx9 is essential for mouse gonad formation
  JOURNAL   Nature 403 (6772), 909-913 (2000)
   PUBMED   10706291
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AY273890.1.
            
            On or before Jun 25, 2006 this sequence version replaced
            XM_001066548.1, NM_181367.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AY273890.1, AY724502.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN14984036, SAMN14984043
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1298
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q13"
     gene            1..1298
                     /gene="Lhx9"
                     /note="LIM homeobox 9"
                     /db_xref="GeneID:289048"
                     /db_xref="RGD:727956"
     exon            1..82
                     /gene="Lhx9"
                     /inference="alignment:Splign:2.1.0"
     exon            83..154
                     /gene="Lhx9"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..1293
                     /gene="Lhx9"
                     /note="LIM homeobox protein 9; LIM-homeodomain type
                     transcription factor 9"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx9"
                     /protein_id="NP_852032.1"
                     /db_xref="GeneID:289048"
                     /db_xref="RGD:727956"
                     /translation="MLNGTTLEAAMLFHGISGGHIQGIMEEMERRSKTEARLAKGTQL
                     NGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTC
                     FAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLT
                     TGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRP
                     RKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSY
                     FAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLP
                     APPSADSGALTPPGTATTLTDLTNPTVTVVTTVTSNMDSHESGSPSQTTLTNLF"
     exon            155..273
                     /gene="Lhx9"
                     /inference="alignment:Splign:2.1.0"
     exon            274..476
                     /gene="Lhx9"
                     /inference="alignment:Splign:2.1.0"
     exon            477..832
                     /gene="Lhx9"
                     /inference="alignment:Splign:2.1.0"
     exon            833..1035
                     /gene="Lhx9"
                     /inference="alignment:Splign:2.1.0"
     exon            1036..1298
                     /gene="Lhx9"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ctgaccacca cctctggcca cctcctctcc aagaaccaaa ttcttgagaa gaacgcctga
       61 caccaagacg agaaacatca agcacaaccg catttcactg cgcggtccgc tactcttgca
      121 cagagaatgc tgaacggcac cactctagag gcagccatgc tcttccacgg aatctccgga
      181 ggccacatcc aaggtatcat ggaggaaatg gagcgcagat ccaagaccga ggcccgtctg
      241 gccaaaggca ctcagctcaa cggccgcgac gcgggtatgc ccccgctcag ccccgagaag
      301 cctgctctgt gcgccggctg cgggggtaag atctctgaca ggtactatct gctggctgta
      361 gacaaacagt ggcaccttag gtgcctgaag tgctgtgaat gtaagctggc cctggaatcg
      421 gagctcacct gctttgccaa ggacggtagc atttactgca aggaggatta ctacagaagg
      481 ttctctgtgc agagatgtgc ccgctgccac cttggcattt ccgcctcgga gatggtcatg
      541 cgcgcccgag actcagtcta ccatctgagc tgcttcactt gctccacttg caacaagacc
      601 ttgaccacgg gcgaccattt cggtatgaag gacagcctgg tatactgccg cgcacacttt
      661 gagaccctct tgcaagggga atatccacct cagctgagct acacggagct ggcggccaag
      721 agcggcggct tagctctgcc ttacttcaat ggcactggca cagtgcagaa ggggcggccc
      781 cggaagcgga agagcccagc tctgggagtg gacatcgtga attacaactc aggttgtaat
      841 gagaacgagg cagaccattt ggaccgggac cagcagcctt acccaccttc ccagaagacc
      901 aaacggatgc gaacttcttt caaacaccac cagcttcgga ccatgaaatc ctactttgcc
      961 atcaaccata acccagatgc caaggacctc aaacagcttg ctcaaaaaac aggcctgacc
     1021 aaaagagttt tgcaggtttg gttccaaaac gcacgagcca aattcagaag gaaccttttg
     1081 cggcaggaga atgggggtgt tgataaagct gacggcacgt cgcttccggc cccgccctca
     1141 gcagacagcg gcgctctcac tccacccggc actgcgacca ctttaacaga cctgaccaat
     1201 cccactgtca ctgtagtgac aactgtgacc tctaacatgg acagccacga atccggaagc
     1261 ccctcacaaa ctaccttaac gaaccttttc taacattg
//
