LOCUS       XM_039105264            1121 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus LIM homeobox 6 (Lhx6), transcript
            variant X4, mRNA.
ACCESSION   XM_039105264
VERSION     XM_039105264.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039105264.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1121
                     /gene="Lhx6"
                     /note="LIM homeobox 6; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:311901"
                     /db_xref="RGD:1306174"
     CDS             315..1007
                     /gene="Lhx6"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx6 isoform X4"
                     /protein_id="XP_038961192.1"
                     /db_xref="GeneID:311901"
                     /db_xref="RGD:1306174"
                     /translation="MYWKHESAAPALPEGCRLPAEGGPTTDQVMAQPGSGCKATTRCL
                     EGTAPPAMAQSDAEALAGALDKDEGRASPCTPSTPSVCSPPSAASSVPSAGKNICSSC
                     GLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCYIKNKEIYCKMDYFSRFGTKC
                     ARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMI
                     ENLKRAAENGCH"
ORIGIN      
        1 ggaggacgac gaggagggag aggaggagga ggaagaggag gaggaggaag aggaggcggc
       61 agcagccgca gaggcagctg cagggacctc tccaagtttg tcgggacctt cttcagaggc
      121 agtggtgccg gcagccaggg aggccaggac tgcgctcaga ccgggggagg agggctgggg
      181 ctgggcccgg ggcggcgggg ccggagcctg ggttctccag ctctcgcatc agcctctgcc
      241 cacagggcgc ccgaggcccc actccgtgct gctctttgcg ctgcgcgccc ttcgagccct
      301 cagttcccgg gcccatgtac tggaagcatg agagcgccgc cccggcgctg cccgagggct
      361 gccggttacc ggcggagggc ggccccacca ccgaccaggt gatggcccag ccagggtccg
      421 gctgcaaagc gaccacccgc tgtcttgaag ggaccgctcc gcctgccatg gctcagtcag
      481 acgccgaggc cttggcaggc gctctggaca aggacgaagg tagagcctcc ccatgtacgc
      541 ccagcacacc ctctgtctgc tcgccgccct ctgccgcctc ttccgtgccg tctgctggca
      601 agaatatctg ctccagttgc ggtctcgaga tcctggaccg gtatctgctc aaggtcaaca
      661 acctcatctg gcacgtgcgg tgcctcgagt gctccgtgtg tcgcacatcg ctgaggcagc
      721 agaatagctg ctacatcaag aacaaggaga tctactgcaa gatggactac ttcagccgat
      781 ttggaaccaa gtgtgcccgg tgcggcagac aaatctatgc cagtgactgg gtgcggcgcg
      841 cgcgcggcaa tgcctaccac ctggcctgct tcgcttgctt ttcctgcaag cgccagctat
      901 ccacgggcga ggaattcggc ctggttgagg agaaggtgct ttgccgcatc cattacgaca
      961 ccatgatcga gaacctcaag agggccgccg agaacggctg ccactagaag agatgggaac
     1021 gcgtggtcag ctgcttctgt cgccccccag ggaacggtct cacgttggag ggggcagtgc
     1081 cctcggaaca ggacagtcag cccaagccag ctaagcgcgc g
//
