LOCUS       XM_039106128            2708 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus LIM homeobox 3 (Lhx3), transcript
            variant X1, mRNA.
ACCESSION   XM_039106128
VERSION     XM_039106128.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039106128.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2708
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2708
                     /gene="Lhx3"
                     /note="LIM homeobox 3; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     9 samples with support for all annotated introns"
                     /db_xref="GeneID:170671"
                     /db_xref="RGD:71078"
     CDS             465..1715
                     /gene="Lhx3"
                     /codon_start=1
                     /product="LIM/homeobox protein Lhx3 isoform X1"
                     /protein_id="XP_038962056.1"
                     /db_xref="GeneID:170671"
                     /db_xref="RGD:71078"
                     /translation="MRVICGSMTWLILVSTEIPMCAGCDQHILDRFILKALDRHWHSK
                     CLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGTKCAACQLGIPPTQVVRRAQDFVYH
                     LHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQREAEATAKRPRTTITAKQLE
                     TLKSAYNTSPKPARHVREQLSSETGLDMRVVQVSARSRPPAPEGARAPREAGQPLTIP
                     TPQVWFQNRRAKEKRLKKDAGRQRWGQYFRNMKRSRGSSKSDKDSIQEGQDSDAEVSF
                     TDEPSMADMGTANGLYSSLGEPAPALGRPVGGLGSFTLEHGGLAGPEQFRELRPGSPY
                     GIPPSPAAPQSLPGPQPLLSSLVYPDTNLGLVPSGPPGGPPPMRVLAGNGPSSDLSTE
                     SSGGYPDFPASPASWLDEVDHAQF"
ORIGIN      
        1 tcaggtgctg tgggcagggg ccatgctgga cagacttact ttgctggaac tctgcagagt
       61 ggggctgaga tgctctgttg atcaaaaccc caaaggcaac gaagttccac gtgtggtcct
      121 ttgcccttgc ttgtaaggac atgttgtcta ttttctgtcc tggctttccc gatcacccca
      181 agggtggggt tttcatttga gatggacacg acccgtctgg cgctggaaac actttgtaga
      241 gcagttattc agcttacagg acagcttggt caccttcttg ctgcggacac atttctagac
      301 ctacttcact ttcccttgac tacagtgagg ctgaggatac agtacgtgag cactgctctc
      361 gctggggagc ctgtggccct gaaagccgca ggagaaggtg gcagaaaggc agatccttgc
      421 acagctctaa ggcctgcagg ctgactccag ctcacgaaag gaccatgcgc gtcatttgtg
      481 gttccatgac ctggcttatt cttgtatcca cagagatccc catgtgcgcg ggatgtgacc
      541 agcacatctt ggaccgtttc atcctaaagg ctctggaccg acattggcac agcaagtgtc
      601 tcaagtgcag tgactgccac gtgcctctgg ctgagcgctg cttcagccgc ggggagagcg
      661 tctactgcaa agacgacttc tttaagcgct tcgggaccaa gtgcgccgca tgccagctgg
      721 gcatcccgcc cacgcaggtg gtgcggcgcg cccaggactt cgtgtaccac ctgcattgct
      781 tcgcctgcgt ggtttgcaag cggcagctgg ccacggggga cgagttctac ctcatggaag
      841 acagccggct ggtgtgcaag gcggactacg aaacagccaa gcagcgagaa gccgaggcca
      901 cagccaagcg gccgcgcacc accatcaccg ccaagcagct ggagacgctg aagagcgcct
      961 acaacacctc gcccaagccg gcgcgccacg tgcgcgagca gctctcctcc gagaccggcc
     1021 tggacatgcg cgtggtgcag gtcagcgctc ggtcgcgtcc cccggcccca gaaggggcgc
     1081 gcgctccgcg ggaagctggg cagccactca ccatccctac cccccaggtg tggttccaga
     1141 accgccgggc caaggaaaag agactgaaga aagacgcagg ccggcagcgc tggggacagt
     1201 atttccgcaa tatgaagcgc tcccgcggca gctccaagtc cgacaaggac agcatccagg
     1261 agggacagga cagcgacgcg gaagtctcct tcactgatga gccgtccatg gctgacatgg
     1321 ggactgctaa tggcctgtac agcagcctgg gagagcctgc ccctgcgttg ggccggcctg
     1381 taggaggcct gggcagcttt acattggagc acggaggttt ggcaggtcca gagcagtttc
     1441 gagagctgcg tccaggcagc ccctatggca tcccaccatc tcctgcggcc ccacagagcc
     1501 ttcccggccc ccagcctctc ctctccagcc tggtataccc agacaccaac ttgggccttg
     1561 tcccttcggg gcctccaggt gggcccccac ccatgagggt gctggctgga aatggaccca
     1621 gctctgacct ctccacagag agcagtggtg gctacccaga ctttcctgct agccctgcct
     1681 cctggctgga tgaagtagac catgctcagt tctgaccgag ggccccccag ttcccttggc
     1741 tctaactcag gggtcttggt gctgcctctg ggtgggcagc tagccccacc ccatgatgtc
     1801 catttcaagg acctctgagg gaaggacagg gttcccacgt gagagaatag agactgtccc
     1861 acttccagct tctctggctg ctccctgggg ctgagggact ccatagccct tccttggaca
     1921 caagcgtagc ctgcctcgtg ggcggctaca agccagtgat tcttgaccgt tctggtaagc
     1981 attgttctcc ctttatcagc cagtgaactc ttgctgctat tttccacagg gcaggaggcc
     2041 aggccctacc tagtgtcctg gcataaaaca atagtaacaa cttgcgtcat cacttctgat
     2101 gggcttggta ggagactgtg ctcggccagc cgtgcctggt cactgacctc tcctcccagc
     2161 tgccagctct cctgacctgg agtctccagg tctttctgtt ctggaatgca atgcgttggg
     2221 gagtggagct ttctggaacc ccttctccaa ggtgtagtct ttaaacgtga agacaattcc
     2281 ctttctcctg aggcacagcc tccctcaggt gcagagcaga aatgtgcagc aaggacagac
     2341 accgttgcca aacagactgt ggtcctgtgc agggggtggg gtgttctgtc agcccagacc
     2401 aggagacctc ccccactgga ggaggttggg ctgggggggt cctcccaatc cagtctgtct
     2461 cagacacaaa gcttggccat gtgtcagtta aagtcactcc tgaaaaccag gatcttggct
     2521 acctgttggt tctgtaaaca tcctgtgact tttatttatt ccccggtgat ccgctctttc
     2581 caagacttca ataaatttgt cagtttccat gctagaaggc ctgtgttttt agtgagcctg
     2641 gagctctggc tgagattgtc gcatggggct gagggcatcc tctcagaggg tagtggtgct
     2701 ggcgctaa
//
